RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 PPP2R2CQ9Y2T4 447 aa8.68□□□□□ -1.02
PDGFC-205ENST00000506880 REXO2Q9Y3B8 237 aaKnown RBP8.68□□□□□ -1.02
PDGFC-205ENST00000506880 OR51B4Q9Y5P0 310 aa8.68□□□□□ -1.02
PDGFC-205ENST00000506880 ATG2BQ96BY7 2078 aa8.68□□□□□ -1.02
PDGFC-205ENST00000506880 EDDM13A0A1B0GTR0 161 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 MUC22E2RYF6 1773 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 I6L893 689 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 STK25O00506 426 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 DCLK1O15075 740 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 GALR2O43603 387 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 KDELR3O43731 214 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 ZNF217O75362 1048 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CHRM1P11229 460 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 COMTP21964 271 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 TGM2P21980 687 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 KDELR1P24390 212 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NFKBIAP25963 317 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NUDT1P36639 197 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CXCL12P48061 93 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CSNK1DP48730 415 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 RENBPP51606 427 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NAP1L1P55209 391 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CDH6P55285 790 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 RWDD2BP57060 319 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NSUN2Q08J23 767 aaKnown RBP eCLIP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 LMAN2Q12907 356 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 XRCC4Q13426 336 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CAMK2GQ13555 558 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 ELAVL3Q14576 367 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 SLC14A2Q15849 920 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 PITRM1Q5JRX3 1037 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 ARTNQ5T4W7 220 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 SH3PXD2AQ5TCZ1 1133 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 MBLAC2Q68D91 279 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 RWDD4Q6NW29 188 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 TXNDC11Q6PKC3 985 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 PEX26Q7Z412 305 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 ADIPOR2Q86V24 386 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 C1orf210Q8IVY1 113 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CARNMT1Q8N4J0 409 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 PCDH20Q8N6Y1 951 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 DTWD2Q8NBA8 298 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NSMCE1Q8WV22 266 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NELL1Q92832 810 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 IGSF8Q969P0 613 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 HAUS1Q96CS2 278 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 ALG14Q96F25 216 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 HES6Q96HZ4 224 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CSPG4P5Q96PW8 444 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NAP1L3Q99457 506 aaPredicted RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 MAK16Q9BXY0 300 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 LACRTQ9GZZ8 138 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CARD9Q9H257 536 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 TMEM245Q9H330 911 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 LRRC19Q9H756 370 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 PCDH18Q9HCL0 1135 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 HOMER3Q9NSC5 361 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 CWC15Q9P013 229 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 NYNRINQ9P2P1 1898 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 XPO7Q9UIA9 1087 aaKnown RBP8.67□□□□□ -1.02
PDGFC-205ENST00000506880 VPS28Q9UK41 221 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 JRKLQ9Y4A0 524 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 PCDHGA2Q9Y5H1 932 aa8.67□□□□□ -1.02
PDGFC-205ENST00000506880 SHROOM3Q8TF72 1996 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 HACD1B0YJ81 288 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 PPP1R12AO14974 1030 aaPredicted RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 LAMTOR5O43504 91 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 RNASEH1O60930 286 aaKnown RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 SRGAP2O75044 1071 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 TJP3O95049 919 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 APBB3O95704 486 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 IGLV3-19P01714 112 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 ERCC2P18074 760 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 IL1R2P27930 398 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 RAD51Q06609 339 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 IL10RBQ08334 325 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 SERINC3Q13530 473 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 DPYSL3Q14195 570 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 PDK1Q15118 436 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 CRY1Q16526 586 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 HNRNPA1L2Q32P51 320 aaKnown RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 FAM46CQ5VWP2 391 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 SLC9A4Q6AI14 798 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 USP30Q70CQ3 517 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 NT5DC3Q86UY8 548 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 KBTBD6Q86V97 674 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 C12orf40Q86WS4 652 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 RAVER1Q8IY67 606 aaKnown RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 IL17RCQ8NAC3 791 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 FLCNQ8NFG4 579 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 ARHGEF2Q92974 986 aaKnown RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 HDAC11Q96DB2 347 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 RNF157Q96PX1 679 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 PEBP4Q96S96 227 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 KCTD15Q96SI1 283 aaPredicted RBP8.66□□□□□ -1.02
PDGFC-205ENST00000506880 VAT1Q99536 393 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 OSBPL1AQ9BXW6 950 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 TRIM7Q9C029 511 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 MUC3BQ9H195 1237 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms