RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CYP3A43Q9HB55 503 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 INIPQ9NRY2 104 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PACSIN3Q9UKS6 424 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CDYLQ9Y232 598 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TDRKHQ9Y2W6 561 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF711Q9Y462 761 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 DYTNA2CJ06 578 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 TCAF2A6NFQ2 919 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 XPO1O14980 1071 aaKnown RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 GRID2O43424 1007 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 HTRA2O43464 458 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 MSCO60682 206 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 POLBP06746 335 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 PDGFRBP09619 1106 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 MCF2P10911 925 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 CYP2F1P24903 491 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 HADHAP40939 763 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 KCNC4Q03721 635 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 CAPSQ13938 189 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 TGFBIQ15582 683 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 NRF1Q16656 503 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 C15orf59Q2T9L4 293 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 CCDC14Q49A88 953 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 SEZ6Q53EL9 994 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 NHSL2Q5HYW2 709 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 FKBP1CQ5VVH2 108 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 LIPMQ5VYY2 423 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 DCLRE1AQ6PJP8 1040 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 DCLK2Q8N568 766 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 TTLL6Q8N841 843 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 ATP6V1E2Q96A05 226 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 C12orf43Q96C57 262 aaKnown RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 CERS2Q96G23 380 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 CNDP2Q96KP4 475 aaKnown RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 MPHOSPH6Q99547 160 aaKnown RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 GATA5Q9BWX5 397 aaPredicted RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 UNC93B1Q9H1C4 597 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 VRTNQ9H8Y1 702 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 LIN28AQ9H9Z2 209 aaKnown RBP9.87□□□□□ -0.83
SYNE1-230ENST00000495090 NMRAL1Q9HBL8 299 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 PFDN4Q9NQP4 134 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 SLC17A6Q9P2U8 582 aa9.87□□□□□ -0.83
SYNE1-230ENST00000495090 COL11A2P13942 1736 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CNTNAP1P78357 1384 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TCP10L2B9ZVM9 353 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TRIM24O15164 1050 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CFLARO15519 480 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PAPSS1O43252 624 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 E2F6O75461 281 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF189O75820 626 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DGKIO75912 1065 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CABYRO75952 493 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 RGS20O76081 388 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 INHBBP09529 407 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 C7P10643 843 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 BMP2P12643 396 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DCKP27707 260 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TFAMQ00059 246 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MAPRE2Q15555 327 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 KCNT2Q6UVM3 1135 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ZYG11AQ6WRX3 759 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DCDC5Q6ZRR9 648 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 FAM183BPQ6ZVS7 135 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CLVS1Q8IUQ0 354 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PLD6Q8N2A8 252 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DDHD1Q8NEL9 900 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CHPT1Q8WUD6 406 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 HTR3CQ8WXA8 447 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TFAP2CQ92754 450 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 USP13Q92995 863 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MAELQ96JY0 434 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ELOVL4Q9GZR5 314 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DNAI2Q9GZS0 605 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CCDC68Q9H2F9 335 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 WDR55Q9H6Y2 383 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 GBA2Q9HCG7 927 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 C8orf4Q9NR00 106 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 SLC38A7Q9NVC3 462 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 DUS2Q9NX74 493 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM9Q9P0T7 183 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 GNPTGQ9UJJ9 305 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 KIAA1257Q9ULG3 409 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ANKRD6Q9Y2G4 727 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 COQ6Q9Y2Z9 468 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TMED5Q9Y3A6 229 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 FADS3Q9Y5Q0 445 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 A0A096LPK6 155 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CCDC162PA2VCL2 907 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 FUOMA2VDF0 154 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 SPATA31C2B4DYI2 1134 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PSMD12O00232 456 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PIK3R2O00459 728 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TIMM44O43615 452 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ESRRBO95718 433 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CD1EP15812 388 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TFEBP19484 476 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MYF6P23409 242 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MPSTP25325 297 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MGAT1P26572 445 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms