RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	EPS8L1	Q8TE68	723 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	GANC	Q8TET4	914 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC20A1	Q8WUM9	679 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	TBCB	Q99426	244 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	PSMB7	Q99436	277 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	RAB6C	Q9H0N0	254 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	GAN	Q9H2C0	597 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	OSGEP	Q9NPF4	335 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	LMBRD1	Q9NUN5	540 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	TAB2	Q9NYJ8	693 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADAMTS1	Q9UHI8	967 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	TRPM6	Q9BX84	2022 aa		11.99	□□□□□ -0.49
VTI1A-208	ENST00000494728	KNTC1	P50748	2209 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728		A0A1W2PPC4	97 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	TARSL2	A2RTX5	802 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728		F8VZ95	297 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	SNAP91	O60641	907 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	MOCS3	O95396	460 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	MT-CO1	P00395	513 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	IL1B	P01584	269 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	UCHL3	P15374	230 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	ERCC5	P28715	1186 aa	Predicted RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	NOS2	P35228	1153 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	GABRB2	P47870	512 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	CXCR3	P49682	368 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	SULT1E1	P49888	294 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNASE9	P60153	205 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF423	Q2M1K9	1284 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	POM121L1P	Q3SYA9	428 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	C5orf22	Q49AR2	442 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	TCP11X2	Q5H9J9	407 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	RABGAP1L	Q5R372	815 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	PRAMEF14	Q5SWL7	426 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNF219	Q5W0B1	726 aa	Predicted RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728		Q6ZVU0	165 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	BNIPL	Q7Z465	357 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	MARCH9	Q86YJ5	346 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM114A1	Q8IWE2	563 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	GPT2	Q8TD30	523 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	SETD7	Q8WTS6	366 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZCCHC14	Q8WYQ9	949 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNF34	Q969K3	372 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	NT5C3B	Q969T7	300 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM131C	Q96AQ9	280 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	NOX5	Q96PH1	765 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	FEM1A	Q9BSK4	669 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	SIK2	Q9H0K1	926 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	SYNC	Q9H7C4	482 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	ARHGEF38	Q9NXL2	777 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	NOCT	Q9UK39	431 aa	Known RBP	11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	FZD4	Q9ULV1	537 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	MSRB2	Q9Y3D2	182 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	LRRK1	Q38SD2	2015 aa		11.98	□□□□□ -0.49
VTI1A-208	ENST00000494728	KALRN	O60229	2985 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM221B	A6H8Z2	402 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728		K7ERQ8	282 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ATP9B	O43861	1147 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	RTN2	O75298	545 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	DKK1	O94907	266 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	CAPNS1	P04632	268 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	CTSL	P07711	333 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	MME	P08473	750 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ATXN1L	P0C7T5	689 aa	Known RBP	11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	SLC2A3	P11169	496 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	GLDC	P23378	1020 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	NOMO3	P69849	1222 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ELAVL3	Q14576	367 aa	Known RBP	11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	SHB	Q15464	509 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	AGBL4	Q5VU57	503 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	CDKAL1	Q5VV42	579 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	IL27RA	Q6UWB1	636 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	GLRX5	Q86SX6	157 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	CCDC117	Q8IWD4	279 aa	Predicted RBP	11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	OR2T34	Q8NGX1	318 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADAMTS14	Q8WXS8	1223 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	OMD	Q99983	421 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	TKTL2	Q9H0I9	626 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	CAAP1	Q9H8G2	361 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	MPP6	Q9NZW5	540 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ZNF212	Q9UDV6	495 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	VPS28	Q9UK41	221 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	SCML1	Q9UN30	329 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	NCKAP1	Q9Y2A7	1128 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	TBC1D30	Q9Y2I9	924 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADAMTS20	P59510	1910 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	BAHCC1	Q9P281	2608 aa		11.97	□□□□□ -0.49
VTI1A-208	ENST00000494728	FASN	P49327	2511 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728		A0A0D9SEW6	157 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728		A0A1W2PR77	199 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	GOLGA8S	H3BPF8	625 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	CBX4	O00257	560 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	TAF4	O00268	1085 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	PES1	O00541	588 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	FLRT2	O43155	660 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	SMAD6	O43541	496 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	RNASEH1	O60930	286 aa	Known RBP	11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	GJB6	O95452	261 aa		11.96	□□□□□ -0.49
VTI1A-208	ENST00000494728	ADH1B	P00325	375 aa		11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms