RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SFXN1Q9H9B4 322 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM8AQ9HCN3 771 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 PAPOLBQ9NRJ5 636 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SLC52A1Q9NWF4 448 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SEMA5BQ9P283 1151 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ABT1Q9ULW3 272 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 AFG3L2Q9Y4W6 797 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 SQORQ9Y6N5 450 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 DHX29Q7Z478 1369 aaKnown RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 KIF15Q9NS87 1388 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 PLEKHG1Q9ULL1 1385 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 ADGRL2O95490 1459 aa2.44□□□□□ -2.02
HMGB1-208ENST00000490788 COL3A1P02461 1466 aaPredicted RBP2.44□□□□□ -2.02
HMGB1-208ENST00000490788 TRPM2O94759 1503 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 F5H423 210 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PCDH17O14917 1159 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 NKX2-8O15522 239 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 DNPH1O43598 174 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ASNA1O43681 348 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 LARGE1O95461 756 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SGPL1O95470 568 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PRF1P14222 555 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ITGB6P18564 788 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TGM2P21980 687 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 HOXA7P31268 230 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 NR4A2P43354 598 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ALDH7A1P49419 539 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SLC37A1P57057 533 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TLE3Q04726 772 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 GAB1Q13480 694 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SPARCL1Q14515 664 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 GRM4Q14833 912 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 DLGAP5Q15398 846 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 AAK1Q2M2I8 961 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PAPD7Q5XG87 772 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ISM2Q6H9L7 571 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 KLHL17Q6TDP4 642 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 C16orf89Q6UX73 402 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SLC39A5Q6ZMH5 540 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 COLCA1Q6ZS62 124 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 B4GALNT4Q76KP1 1039 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 CYB5R4Q7L1T6 521 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TRAPPC11Q7Z392 1133 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TFAP2DQ7Z6R9 452 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 GLCCI1Q86VQ1 547 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TICAM2Q86XR7 235 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 RHPN2Q8IUC4 686 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF366Q8N895 744 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SLC44A5Q8NCS7 719 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 NSMCE1Q8WV22 266 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 NPIPB3Q92617 1050 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 CENPIQ92674 756 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 C18orf8Q96DM3 657 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 P2RY11Q96G91 374 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ZFYVE19Q96K21 471 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 NLRP4Q96MN2 994 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF48Q96MX3 618 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 MPHOSPH6Q99547 160 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PAAF1Q9BRP4 392 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 MOV10Q9HCE1 1003 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 AGO4Q9HCK5 861 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 FSCN3Q9NQT6 498 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 DECR2Q9NUI1 292 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 LIN7CQ9NUP9 197 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 LRFN1Q9P244 771 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 FNIP2Q9P278 1114 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 ANAPC4Q9UJX5 808 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 BAG5Q9UL15 447 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 RAB21Q9UL25 225 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 SLC12A4Q9UP95 1085 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 TNFSF13BQ9Y275 285 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 B3GNT3Q9Y2A9 372 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 GOLGB1Q14789 3259 aaKnown RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 INO80Q9ULG1 1556 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 RGPD3A6NKT7 1758 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 RGPD4Q7Z3J3 1758 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 FNDC1Q4ZHG4 1894 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-208ENST00000490788 PKD1L2Q7Z442 2459 aa2.43□□□□□ -2.02
HMGB1-208ENST00000490788 OVOS2A0A0G2JMS6 1433 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 OVOS2A0A0J9YW53 1432 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 OVOS2Q6IE36 1432 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 CDC42BPBQ9Y5S2 1711 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TNRC6CQ9HCJ0 1690 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PIK3R4Q99570 1358 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 A0A087WV62 115 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 CCDC194A0A1B0GVG4 234 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 GXYLT2A0PJZ3 443 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 AQP12BA6NM10 295 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 C16orf96A6NNT2 1141 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 KIF28PB7ZC32 967 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 MSI1O43347 362 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PPP6R2O75170 966 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RPP40O75818 363 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 CNTN5O94779 1100 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 SNHG28P0DPA3 235 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 KLRK1P26718 216 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 IDUAP35475 653 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PCP4P48539 62 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF84P51523 738 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms