RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 SCN4BQ8IWT1 228 aa5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 FAM110DQ8TAY7 271 aaPredicted RBP5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 SMG7Q92540 1137 aaKnown RBP5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 IFT27Q9BW83 186 aa5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 CADM1Q9BY67 442 aaKnown RBP5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 RIC8AQ9NPQ8 531 aa5.35□□□□□ -1.55
HMGB1P38-201ENST00000490557 STRNO43815 780 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 TSPAN3O60637 253 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 METTL18O95568 372 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 TOP3BO95985 862 aaKnown RBP5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 LCKP06239 509 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 KLRC2P26717 231 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 C5orf22Q49AR2 442 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 CBWD5Q5RIA9 395 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 C6orf10Q5SRN2 563 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 FAM171A1Q5VUB5 890 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 RTL10Q7L3V2 364 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 RNF144BQ7Z419 303 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 CERS3Q8IU89 383 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 HERC6Q8IVU3 1022 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 BRSK2Q8IWQ3 736 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 USP38Q8NB14 1042 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 STAMQ92783 540 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 COQ8BQ96D53 544 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 THSD1Q9NS62 852 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 ELOVL5Q9NYP7 299 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 RNF7Q9UBF6 113 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 DHDHQ9UQ10 334 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 HS3ST3B1Q9Y662 390 aa5.34□□□□□ -1.55
HMGB1P38-201ENST00000490557 FOXO6A8MYZ6 492 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 PEX12O00623 359 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 PPEF2O14830 753 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 HBP1O60381 514 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 CNOT3O75175 753 aaKnown RBP5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 WEE2P0C1S8 567 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM191BP0C7N4 346 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 TYK2P29597 1187 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 SKIV2L2P42285 1042 aaKnown RBP5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ME1P48163 572 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ARHGAP8P85298 464 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 RHAGQ02094 409 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 MTX1Q13505 466 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 HSP90AB4PQ58FF6 505 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 HMBOX1Q6NT76 420 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ARFGAP1Q8N6T3 406 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 EXD3Q8N9H8 876 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 MPLKIPQ8TAP9 179 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 NCSTNQ92542 709 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 KAT2AQ92830 837 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ZFYVE19Q96K21 471 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 HERC2P3Q9BVR0 1158 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 SPRTNQ9H040 489 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 DECR2Q9NUI1 292 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM248Q9NWD8 314 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 RRN3Q9NYV6 651 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ANAPC4Q9UJX5 808 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 GDAQ9Y2T3 454 aa5.33□□□□□ -1.56
HMGB1P38-201ENST00000490557 ZNF521Q96K83 1311 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 TRBV5-3A0A0A0MS03 114 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 LOC102724159A0A0B4J2E5 919 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 SOCS2O14508 198 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 KLK10O43240 276 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 SYF2O95926 243 aaKnown RBP5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 PRF1P14222 555 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 PTGER1P34995 402 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 UBE3AQ05086 875 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 PWP2Q15269 919 aaKnown RBP5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 SMTNL2Q2TAL5 461 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM95Q3KNT9 176 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 MANEAQ5SRI9 462 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 TTLL5Q6EMB2 1281 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 DENND1BQ6P3S1 775 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 FAM185AQ8N0U4 392 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 DPP10Q8N608 796 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM217Q8N7C4 229 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 C2CD4CQ8TF44 421 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 EME1Q96AY2 570 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 UBXN10Q96LJ8 280 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 ZNF778Q96MU6 729 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM79Q9BSE2 394 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 ACTR5Q9H9F9 607 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 SLC22A11Q9NSA0 550 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 POT1Q9NUX5 634 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 MSRB1Q9NZV6 116 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 HEY2Q9UBP5 337 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 COG5Q9UP83 839 aa5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P38-201ENST00000490557 NEURL1O76050 574 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 CBX6O95503 412 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 CNPP09543 421 aaKnown RBP5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 FCGR2AP12318 317 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 AVPR2P30518 371 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 ALDH7A1P49419 539 aaKnown RBP5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 ZBTB16Q05516 673 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 BYSLQ13895 437 aaKnown RBP5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 INPP5JQ15735 1006 aaPredicted RBP5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 AP5B1Q2VPB7 878 aa5.31□□□□□ -1.56
HMGB1P38-201ENST00000490557 TMEM268Q5VZI3 342 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms