RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 TRAPPC11Q7Z392 1133 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 CCDC25Q86WR0 208 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 VPS52Q8N1B4 723 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 CSGALNACT1Q8TDX6 532 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 C2CD4CQ8TF44 421 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 CENPIQ92674 756 aaPredicted RBP4.05□□□□□ -1.76
RFC4-213ENST00000489028 SIRT3Q9NTG7 399 aaPredicted RBP4.05□□□□□ -1.76
RFC4-213ENST00000489028 NDUFAF4Q9P032 175 aa4.05□□□□□ -1.76
RFC4-213ENST00000489028 HMX3A6NHT5 357 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 C17orf100A8MU93 164 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 TNFRSF13BO14836 293 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 SMAD6O43541 496 aaKnown RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 PKMP14618 531 aaKnown RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 TBXAS1P24557 533 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 CST5P28325 142 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 CHKAP35790 457 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 STAT1P42224 750 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 PCP4P48539 62 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 ALG10Q5BKT4 473 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 ALG10BQ5I7T1 473 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 C10orf62Q5T681 223 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 CTU1Q7Z7A3 348 aaKnown RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 SCN4BQ8IWT1 228 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 SLC25A41Q8N5S1 370 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 CMASQ8NFW8 434 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 B4GALNT2Q8NHY0 566 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 KCNJ9Q92806 393 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 PIGSQ96S52 555 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 CLPBQ9H078 707 aa4.04□□□□□ -1.76
RFC4-213ENST00000489028 MRPL44Q9H9J2 332 aaKnown RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 PNRC2Q9NPJ4 139 aaKnown RBP4.04□□□□□ -1.76
RFC4-213ENST00000489028 A0A0A0MQY5 61 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 E7EVH7 732 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 LCKP06239 509 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 CSF1P09603 554 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 CHN1P15882 459 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 HOXB9P17482 250 aaPredicted RBP4.03□□□□□ -1.76
RFC4-213ENST00000489028 KLRC2P26717 231 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 CHRNA5P30532 468 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 HOXA11P31270 313 aaPredicted RBP4.03□□□□□ -1.76
RFC4-213ENST00000489028 TNFSF8P32971 234 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 RFX5P48382 616 aaPredicted RBP4.03□□□□□ -1.76
RFC4-213ENST00000489028 TRAPPC10P48553 1259 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 SMAD1Q15797 465 aaKnown RBP4.03□□□□□ -1.76
RFC4-213ENST00000489028 GXYLT1Q4G148 440 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 WASHC2DQ5SRD0 308 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 KDM1BQ8NB78 822 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 ENGASEQ8NFI3 743 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 LPAR1Q92633 364 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 URB1-AS1Q96HZ7 61 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 MARK4Q96L34 752 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 TAF1DQ9H5J8 278 aaPredicted RBP4.03□□□□□ -1.76
RFC4-213ENST00000489028 RMI1Q9H9A7 625 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 PLEKHA2Q9HB19 425 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 G6PC2Q9NQR9 355 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 TBC1D14Q9P2M4 693 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 SLC25A13Q9UJS0 675 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 INSL5Q9Y5Q6 135 aa4.03□□□□□ -1.76
RFC4-213ENST00000489028 SPTLC2O15270 562 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 HNRNPRO43390 633 aaKnown RBP4.02□□□□□ -1.77
RFC4-213ENST00000489028 KRT38O76015 456 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 ARSAP15289 507 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 SLC16A2P36021 539 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 TRAF1Q13077 416 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 CUL4BQ13620 913 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 ALKBH1Q13686 389 aaKnown RBP4.02□□□□□ -1.77
RFC4-213ENST00000489028 KRT72Q14CN4 511 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 POSTNQ15063 836 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 GPR162Q16538 588 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 PLK5Q496M5 336 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 Q5PR19 223 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 FAM83BQ5T0W9 1011 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 VWA5B1Q5TIE3 1220 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 FAM171A1Q5VUB5 890 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 PARM1Q6UWI2 310 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 SLC16A12Q6ZSM3 486 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 MYCT1Q8N699 235 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 PTGR2Q8N8N7 351 aaPredicted RBP4.02□□□□□ -1.77
RFC4-213ENST00000489028 RILPL2Q969X0 211 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 WDR77Q9BQA1 342 aaPredicted RBP4.02□□□□□ -1.77
RFC4-213ENST00000489028 TRIM31Q9BZY9 425 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 ISCUQ9H1K1 167 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 HIPK3Q9H422 1215 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 TASP1Q9H6P5 420 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 ACAD9Q9H845 621 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 ACTR5Q9H9F9 607 aaPredicted RBP4.02□□□□□ -1.77
RFC4-213ENST00000489028 UPB1Q9UBR1 384 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 KLQ9UEF7 1012 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 RIPOR2Q9Y4F9 1068 aa4.02□□□□□ -1.77
RFC4-213ENST00000489028 IGKV2D-30A0A075B6S6 120 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 FAM90A8PA6NJQ4 464 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 BECN2A8MW95 431 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 FAM155BO75949 473 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 KLKB1P03952 638 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 FAM90A13PP0C7W8 464 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 FAM90A24PP0C7X0 464 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 CCKARP32238 428 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 CYP2J2P51589 502 aa4.01□□□□□ -1.77
RFC4-213ENST00000489028 TMPRSS3P57727 454 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms