RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ZNF354C	Q86Y25	554 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	FAM217A	Q8IXS0	508 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	PPIL6	Q8IXY8	311 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	NAT8L	Q8N9F0	302 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.48	□□□□□ -0.57
APTX-223	ENST00000479656	USP33	Q8TEY7	942 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	BHMT	Q93088	406 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	FUT8	Q9BYC5	575 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	FAM129A	Q9BZQ8	928 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	DNAJC17	Q9NVM6	304 aa	Known RBP	11.48	□□□□□ -0.57
APTX-223	ENST00000479656	IPO11	Q9UI26	975 aa	Known RBP	11.48	□□□□□ -0.57
APTX-223	ENST00000479656	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.48	□□□□□ -0.57
APTX-223	ENST00000479656	DOCK4	Q8N1I0	1966 aa		11.48	□□□□□ -0.57
APTX-223	ENST00000479656	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656		A0A0D9SEW6	157 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656		A0A1B0GVM2	712 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	E2F8	A0AVK6	867 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	TCAF2	A6NFQ2	919 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	GOLGA8M	H3BSY2	632 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656		J3KR12	359 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	GFRA2	O00451	464 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	MATN3	O15232	486 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ZBTB24	O43167	697 aa	Predicted RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	MTSS1	O43312	755 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	CCNB1	P14635	433 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ACVRL1	P37023	503 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	YBEY	P58557	167 aa	Predicted RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	GAD2	Q05329	585 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ZNF33A	Q06730	810 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	DHX9	Q08211	1270 aa	Known RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ADAM15	Q13444	863 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	CASP8	Q14790	479 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	MORF4L2	Q15014	288 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	SYCE2	Q6PIF2	218 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	C4orf22	Q6V702	233 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	TPGS1	Q6ZTW0	290 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	HDX	Q7Z353	690 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	CCDC25	Q86WR0	208 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	LRRC49	Q8IUZ0	686 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	CARNMT1	Q8N4J0	409 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	TDRD5	Q8NAT2	981 aa	Known RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	TSEN2	Q8NCE0	465 aa	Known RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	PRCC	Q92733	491 aa	Predicted RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ZBTB9	Q96C00	473 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	AGAP3	Q96P47	875 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	RETREG1	Q9H6L5	497 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.47	□□□□□ -0.57
APTX-223	ENST00000479656	ATP8A1	Q9Y2Q0	1164 aa		11.47	□□□□□ -0.57
APTX-223	ENST00000479656		H0Y626	953 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	OPHN1	O60890	802 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	SASH3	O75995	380 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	FSHR	P23945	695 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	GNA12	Q03113	381 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	GRIN2C	Q14957	1233 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	PARP6	Q2NL67	630 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	LRIT3	Q3SXY7	679 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	PARP15	Q460N3	678 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	C6orf118	Q5T5N4	469 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	TIGD7	Q6NT04	549 aa	Predicted RBP	11.46	□□□□□ -0.57
APTX-223	ENST00000479656	CHST9	Q7L1S5	443 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	TMC3	Q7Z5M5	1100 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	CPXM2	Q8N436	756 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	OR7D4	Q8NG98	312 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	DDI1	Q8WTU0	396 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	ARHGEF2	Q92974	986 aa	Known RBP	11.46	□□□□□ -0.57
APTX-223	ENST00000479656	LINC00597	Q9H2U6	94 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	TTYH1	Q9H313	450 aa	Predicted RBP	11.46	□□□□□ -0.57
APTX-223	ENST00000479656	PLK2	Q9NYY3	685 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	ZMYM5	Q9UJ78	669 aa		11.46	□□□□□ -0.57
APTX-223	ENST00000479656	COLQ	Q9Y215	455 aa	Predicted RBP	11.46	□□□□□ -0.57
APTX-223	ENST00000479656	NDC80	O14777	642 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF189	O75820	626 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TMEM63A	O94886	807 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	APRT	P07741	180 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	RHOC	P08134	193 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	PSMB4	P28070	264 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	HOXD11	P31277	338 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	CD68	P34810	354 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	HSPA9	P38646	679 aa	Known RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	SERINC3	Q13530	473 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	KCNJ11	Q14654	390 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF77	Q15935	545 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	MPPE1	Q53F39	396 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	FSCB	Q5H9T9	825 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	IL31	Q6EBC2	164 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	LEKR1	Q6ZMV7	388 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	SETD3	Q86TU7	594 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	HOOK3	Q86VS8	718 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	CNTD1	Q8N815	330 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	HJURP	Q8NCD3	748 aa	Predicted RBP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TEKT5	Q96M29	485 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	VAT1	Q99536	393 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	SPON2	Q9BUD6	331 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	TXLNGY	Q9BZA5	131 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	MAGEH1	Q9H213	219 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	SP110	Q9HB58	689 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.46	□□□□□ -0.58
APTX-223	ENST00000479656	LMCD1	Q9NZU5	365 aa		11.46	□□□□□ -0.58
APTX-223	ENST00000479656	CLEC1B	Q9P126	229 aa		11.46	□□□□□ -0.58

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