RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP48-208ENST00000479177 ASB3Q9Y575 518 aa6.9□□□□□ -1.3
USP48-208ENST00000479177 SYNJ2BP-COX16A0A087WUM0 186 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 LRRD1A4D1F6 860 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ZNF840PA6NDX5 716 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PI4K2BG5E9Z4 385 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 I6L893 689 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 PGRMC1O00264 195 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 MDM4O15151 490 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CCL16O15467 120 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 MSI1O43347 362 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 EIF4EBP3O60516 100 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 F9P00740 461 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 LRG1P02750 347 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PYGMP11217 842 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 RALAP11233 206 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 RARGP13631 454 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PTPN7P35236 360 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CDKN2BP42772 138 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CXCR3P49682 368 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 TUBP50607 506 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ARSEP51690 589 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 SCAPQ12770 1279 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 NME3Q13232 169 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 TAF12Q16514 161 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PPP2R5EQ16537 467 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 DPYSL2Q16555 572 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 TAZQ16635 292 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CA9Q16790 459 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ATP13A4Q4VNC1 1196 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PPM1LQ5SGD2 360 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 SEL1L2Q5TEA6 688 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 TMCO4Q5TGY1 634 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 AADACL2Q6P093 401 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 SCYL2Q6P3W7 929 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 RSRC2Q7L4I2 434 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 ANKS1BQ7Z6G8 1248 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 DNAJB7Q7Z6W7 309 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 TMEM150AQ86TG1 271 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 FAM131BQ86XD5 332 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ZNF276Q8N554 614 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CCDC185Q8N715 623 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 LRRN4CLQ8ND94 238 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CMASQ8NFW8 434 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 EXD1Q8NHP7 514 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ACTRT1Q8TDG2 376 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 GPBAR1Q8TDU6 330 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 RNF139Q8WU17 664 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 HDAC7Q8WUI4 952 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 RAPGEF5Q92565 580 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 NTAN1Q96AB6 310 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 MRPL38Q96DV4 380 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 RBM41Q96IZ5 413 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 MS4A14Q96JA4 679 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 ZNF512Q96ME7 567 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 SERPINB11Q96P15 392 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CDK5RAP1Q96SZ6 601 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 HERPUD2Q9BSE4 406 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CARD6Q9BX69 1037 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 LRRC3Q9BY71 257 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CEP44Q9C0F1 390 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 CCSER2Q9H7U1 834 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 PCDH18Q9HCL0 1135 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 OLA1Q9NTK5 396 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP48-208ENST00000479177 GPATCH2LQ9NWQ4 482 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 TRPM5Q9NZQ8 1165 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 COX16Q9P0S2 106 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 UXTQ9UBK9 157 aaPredicted RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 RNF14Q9UBS8 474 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 NUDT5Q9UKK9 219 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 FZD10Q9ULW2 581 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 HCFC2Q9Y5Z7 792 aa6.89□□□□□ -1.31
USP48-208ENST00000479177 HELZP42694 1942 aaKnown RBP6.89□□□□□ -1.31
USP48-208ENST00000479177 C2orf16Q68DN1 1984 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 hCG_1818297A0A087WSY0 165 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 FAM95CA0A1B0GW59 222 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 A0A1W2PPC1 479 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 ZNF487B1APH4 448 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 RFXAPO00287 272 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 PER2O15055 1255 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 COCHO43405 550 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 TLR5O60602 858 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 RFPL2O75678 378 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 ZRANB2O95218 330 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP48-208ENST00000479177 PAPLNO95428 1278 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 TBX18O95935 607 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 OAS1P00973 400 aaKnown RBP6.88□□□□□ -1.31
USP48-208ENST00000479177 IGLV3-27P01718 113 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 FGGP02679 453 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 CD48P09326 243 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 HNRNPA1P09651 372 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP48-208ENST00000479177 GBP1P32455 592 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 PPP3CCP48454 512 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 NRIP1P48552 1158 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 EPHA5P54756 1037 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 AIF1P55008 147 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 ITIH3Q06033 890 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 EFEMP1Q12805 493 aa6.88□□□□□ -1.31
USP48-208ENST00000479177 DPYSL3Q14195 570 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms