RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 C9orf64Q5T6V5 341 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 PTAR1Q7Z6K3 402 aaPredicted RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 TP53INP2Q8IXH6 220 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 SLC35F3Q8IY50 421 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 ARHGAP18Q8N392 663 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 IGSF22Q8N9C0 903 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 LMX1AQ8TE12 382 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 TTC17Q96AE7 1141 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 TCTN2Q96GX1 697 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 TAAR9Q96RI9 348 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 KCNK16Q96T55 309 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 CPEB1Q9BZB8 566 aaKnown RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 ASPSCR1Q9BZE9 553 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 FOXP3Q9BZS1 431 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 IPO11Q9UI26 975 aaKnown RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 SIX4Q9UIU6 781 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 NAGPAQ9UK23 515 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 CLEC4EQ9ULY5 219 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 EXOC7Q9UPT5 735 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 AKAP9Q99996 3911 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 SHANK1Q9Y566 2161 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 LMO7DNF2Z398 122 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 CLDN5O00501 218 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 KIAA0391O15091 583 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 TBCAO75347 108 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 KLKB1P03952 638 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 PRKAR1AP10644 381 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 JUNDP17535 347 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 TCN2P20062 427 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 UGT1A3P35503 534 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 ZNF131P52739 623 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 ZFP36L1Q07352 338 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 ELOAQ14241 798 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 CLPPQ16740 277 aaPredicted RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 DEFB109BQ30KR1 87 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 CRELD2Q6UXH1 353 aaPredicted RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 DENND1CQ8IV53 801 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 SDR16C5Q8N3Y7 309 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 MYCT1Q8N699 235 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 KCNB2Q92953 911 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 TMA16Q96EY4 203 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 MYO19Q96H55 970 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 TEFMQ96QE5 360 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 FAM213AQ9BRX8 229 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 DDA1Q9BW61 102 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 LRRN3Q9H3W5 708 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 ST6GALNAC4Q9H4F1 302 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 CSNK1G1Q9HCP0 422 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 GPR27Q9NS67 375 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 APOBEC3BQ9UH17 382 aaKnown RBP8.32□□□□□ -1.08
USP54-211ENST00000474929 DOLKQ9UPQ8 538 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 PCDHB3Q9Y5E6 796 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 SDK2Q58EX2 2172 aa8.32□□□□□ -1.08
USP54-211ENST00000474929 TCP11X1B4DZS4 312 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 TULP1O00294 542 aaPredicted RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 WNT7AO00755 349 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 MDM4O15151 490 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 ALOX15BO15296 676 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 SLC31A1O15431 190 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 IRAK2O43187 625 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 ZW10O43264 779 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 RAD1O60671 282 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 SORBS2O94875 1100 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 IGHDP01880 384 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CAPN3P20807 821 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 MAP4P27816 1152 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 RAB15P59190 212 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 MRPL49Q13405 166 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 PTK2BQ14289 1009 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 DRAP1Q14919 205 aaPredicted RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 DUOXA2Q1HG44 320 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 SMTNL2Q2TAL5 461 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 LVRNQ6Q4G3 990 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 GCNT7Q6ZNI0 430 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 Q6ZSR6 202 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CCDC186Q7Z3E2 898 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 RD3Q7Z3Z2 195 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 TMPRSS9Q7Z410 1059 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 HPS6Q86YV9 775 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CCNJLQ8IV13 435 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 SLC22A18ASQ8N1D0 253 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 FSTL5Q8N475 847 aaPredicted RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 JPH3Q8WXH2 748 aaPredicted RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 OR8D1Q8WZ84 308 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 STARD8Q92502 1023 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CCDC74AQ96AQ1 378 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CDK5RAP3Q96JB5 506 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 MYOCQ99972 504 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 MRPL45Q9BRJ2 306 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 TRIT1Q9H3H1 467 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 DPEP3Q9H4B8 488 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 CYP4F12Q9HCS2 524 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 OLA1Q9NTK5 396 aaKnown RBP8.31□□□□□ -1.08
USP54-211ENST00000474929 STOML2Q9UJZ1 356 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 ERVW-1Q9UQF0 538 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 HS3ST3A1Q9Y663 406 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 KCNMB2Q9Y691 235 aa8.31□□□□□ -1.08
USP54-211ENST00000474929 A0A1W2PQH9 124 aa8.3□□□□□ -1.08
USP54-211ENST00000474929 ANKRD63C9JTQ0 380 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms