RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 BAZ2BQ9UIF8 2168 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 HTRA2O43464 458 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 FAM58BPP0C7Q3 252 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 SLC16A2P36021 539 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DPP6P42658 865 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 BMXP51813 675 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 FOLH1Q04609 750 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 STILQ15468 1287 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 MFSD14BQ5SR56 506 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 NANOGP8Q6NSW7 305 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 RSBN1LQ6PCB5 846 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 MINDY1Q8N5J2 469 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 ZSWIM2Q8NEG5 633 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 DEPTORQ8TB45 409 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 PEX13Q92968 403 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 GATA5Q9BWX5 397 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 AGO4Q9HCK5 861 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 CYTH4Q9UIA0 394 aa5.47□□□□□ -1.53
SYNE1-220ENST00000471834 OAS3Q9Y6K5 1087 aaKnown RBP5.47□□□□□ -1.53
SYNE1-220ENST00000471834 PARP14Q460N5 1801 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 CLRN2A0PK11 232 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 SPAG7O75391 227 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 MAGEA2P43356 314 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 NDST2P52849 883 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 PDIA2Q13087 525 aaKnown RBP5.46□□□□□ -1.53
SYNE1-220ENST00000471834 IRF5Q13568 498 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 ACBD5Q5T8D3 534 aaPredicted RBP5.46□□□□□ -1.53
SYNE1-220ENST00000471834 FAM171BQ6P995 826 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 TRIM50Q86XT4 487 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 DPP10Q8N608 796 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 TFAP2BQ92481 460 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 OSBPL6Q9BZF3 934 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 CPNE5Q9HCH3 593 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 COPG2Q9UBF2 871 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 RAP2CQ9Y3L5 183 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 NUB1Q9Y5A7 615 aa5.46□□□□□ -1.53
SYNE1-220ENST00000471834 SLC35F4A4IF30 521 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TISP43B9A030 160 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 HLA-DRAP01903 254 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 APOEP02649 317 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FGF4P08620 206 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GAAP10253 952 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CYP2C9P11712 490 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ITIH1P19827 911 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 BCAP31P51572 246 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FSTL1Q12841 308 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PTK7Q13308 1070 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 HSDL1Q3SXM5 330 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 UGT3A2Q3SY77 523 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ATP13A4Q4VNC1 1196 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 XKR9Q5GH70 373 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SNRNP48Q6IEG0 339 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FAM45BPQ6NSW5 357 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NIPAL1Q6NVV3 410 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 KIAA0408Q6ZU52 694 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 KIAA0825Q8IV33 1275 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 WDR75Q8IWA0 830 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PCDH19Q8TAB3 1148 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 FAM45AQ8TCE6 357 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SYTL5Q8TDW5 730 aaPredicted RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SKA2Q8WVK7 121 aaPredicted RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 YME1L1Q96TA2 773 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CORO1BQ9BR76 489 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PORCNQ9H237 461 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 EVA1BQ9NVM1 165 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 USE1Q9NZ43 259 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM181Q9P2C4 612 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SRRDQ9UH36 339 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GNPTGQ9UJJ9 305 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF112Q9UJU3 913 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 INPP5FQ9Y2H2 1132 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 A0A0G2JMZ2 1700 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 HACD1B0YJ81 288 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SDHDO14521 159 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CILPO75339 1184 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 PDGFRBP09619 1106 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 COX4I1P13073 169 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 HOXD8P13378 290 aaPredicted RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GYS1P13807 737 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CD19P15391 556 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SERPINB6P35237 376 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 AQP5P55064 265 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GABARAPL2P60520 117 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NFKB2Q00653 900 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 LLGL1Q15334 1064 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TRIP13Q15645 432 aaPredicted RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 XKR4Q5GH76 650 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NTAN1Q96AB6 310 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 TXNDC15Q96J42 360 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 MRPL46Q9H2W6 279 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 BCAP29Q9UHQ4 241 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SIX4Q9UIU6 781 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 GGT7Q9UJ14 662 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 SLC8A2Q9UPR5 921 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 AKT3Q9Y243 479 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 CAPN8A6NHC0 703 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 WDR64B1ANS9 1081 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 NPHS1O60500 1241 aa5.46□□□□□ -1.54
SYNE1-220ENST00000471834 H2AFYO75367 372 aaKnown RBP5.46□□□□□ -1.54
SYNE1-220ENST00000471834 POLR2MP0CAP2 368 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms