RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 SERAC1Q96JX3 654 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 PRMT1Q99873 361 aaKnown RBP18.02■□□□□ 0.48
COL7A1-206ENST00000466591 C2orf49Q9BVC5 232 aaPredicted RBP18.02■□□□□ 0.48
COL7A1-206ENST00000466591 WASF3Q9UPY6 502 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 FHOD1Q9Y613 1164 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 EPG5Q9HCE0 2579 aa18.02■□□□□ 0.47
COL7A1-206ENST00000466591 IGHV4-34P06331 123 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 CD38P28907 300 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 RECQLP46063 649 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-206ENST00000466591 ADPRHP54922 357 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 BNC1Q01954 994 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 CCDC15Q0P6D6 951 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 POM121L1PQ3SYA9 428 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 RAB44Q7Z6P3 723 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-206ENST00000466591 KDF1Q8NAX2 398 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-206ENST00000466591 ZNF397Q8NF99 534 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-206ENST00000466591 C1orf216Q8TAB5 229 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 GATA6Q92908 595 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 PTPRN2Q92932 1015 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 FEM1AQ9BSK4 669 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 GDF3Q9NR23 364 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 TMEM51Q9NW97 253 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 TAB2Q9NYJ8 693 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 FTSJ1Q9UET6 329 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 ADAMTS1Q9UHI8 967 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 SLCO1B1Q9Y6L6 691 aa18.01■□□□□ 0.47
COL7A1-206ENST00000466591 H0Y8X5 98 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 VILLO15195 856 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 SRGAP2O75044 1071 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 ADCY5O95622 1261 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 LSM8O95777 96 aaKnown RBP18■□□□□ 0.47
COL7A1-206ENST00000466591 ITGAVP06756 1048 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 VAV1P15498 845 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 ARRB1P49407 418 aaPredicted RBP18■□□□□ 0.47
COL7A1-206ENST00000466591 SYCP1Q15431 976 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 DLG2Q15700 870 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 TCP11X2Q5H9J9 407 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 C6orf118Q5T5N4 469 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 KLHDC7AQ5VTJ3 777 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 CXorf57Q6NSI4 855 aaKnown RBP18■□□□□ 0.47
COL7A1-206ENST00000466591 Q6ZVU0 165 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 AADATQ8N5Z0 425 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 FAM129BQ96TA1 746 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 SAMSN1Q9NSI8 373 aaKnown RBP18■□□□□ 0.47
COL7A1-206ENST00000466591 PIGVQ9NUD9 493 aa18■□□□□ 0.47
COL7A1-206ENST00000466591 MAGEC1O60732 1142 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 UCHL3P15374 230 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 MAT2AP31153 395 aaKnown RBP17.99■□□□□ 0.47
COL7A1-206ENST00000466591 CCR5P51681 352 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 PLK1P53350 603 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 SLC25A52Q3SY17 297 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 CT47A1Q5JQC4 288 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-206ENST00000466591 MIIPQ5JXC2 388 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 ACBD5Q5T8D3 534 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-206ENST00000466591 TFAP2DQ7Z6R9 452 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 GLRX5Q86SX6 157 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 TBCBQ99426 244 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 VPS16Q9H269 839 aa17.99■□□□□ 0.47
COL7A1-206ENST00000466591 GOLGA6L22H0YM25 854 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 KPNA3O00505 521 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-206ENST00000466591 YKT6O15498 198 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 SLC7A4O43246 635 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 TNFSF14O43557 240 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 CBFA2T3O75081 653 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 OR1E1P30953 314 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 CTSKP43235 329 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 CXCR3P49682 368 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 EIF4EBP2Q13542 120 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-206ENST00000466591 STAT4Q14765 748 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 ARL13BQ3SXY8 428 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 NAA35Q5VZE5 725 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 C14orf80Q86SX3 495 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 PIP4K2CQ8TBX8 421 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 CPA5Q8WXQ8 436 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 GBP4Q96PP9 640 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 NPY6RQ99463 290 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 ELF4Q99607 663 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-206ENST00000466591 SPON2Q9BUD6 331 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 STK33Q9BYT3 514 aa17.98■□□□□ 0.47
COL7A1-206ENST00000466591 CACNA1EQ15878 2313 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 F8VZ95 297 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 PLK4O00444 970 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 ALOX15BO15296 676 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 ATP9BO43861 1147 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 PCDHGA12O60330 932 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 RTN2O75298 545 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 GFPT2O94808 682 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 MMEP08473 750 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 ATXN1LP0C7T5 689 aaKnown RBP17.97■□□□□ 0.47
COL7A1-206ENST00000466591 C7P10643 843 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SCNN1AP37088 669 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 IRAK1P51617 712 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 NUMA1Q14980 2115 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 CDO1Q16878 200 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SETMARQ53H47 684 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-206ENST00000466591 HS1BP3Q53T59 392 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 C2CD6Q53TS8 623 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 PRAMEF14Q5SWL7 426 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 NAPEPLDQ6IQ20 393 aa17.97■□□□□ 0.47
COL7A1-206ENST00000466591 SASS6Q6UVJ0 657 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms