RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 PBXIP1Q96AQ6 731 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 PPP1R14BQ96C90 147 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 CCT7Q99832 543 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 NEUROG2Q9H2A3 272 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP54-210ENST00000466048 KLHL11Q9NVR0 708 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 PAK5Q9P286 719 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 DKK3Q9UBP4 350 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 TLK1Q9UKI8 766 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 SLC12A8A0AV02 714 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 FAM47DPA6NHR8 397 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 SYNCRIPO60506 623 aaKnown RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 USP17L7P0C7H9 530 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 NPR3P17342 541 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 TKTL1P51854 596 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 ARHGDIAP52565 204 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 BASP1P80723 227 aaKnown RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 OGDHQ02218 1023 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 MLLT1Q03111 559 aaPredicted RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 TAZQ16635 292 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 ERMARDQ5T6L9 678 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 ARMCX6Q7L4S7 300 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 FUKQ8N0W3 1084 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 ATP11CQ8NB49 1132 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 RAPGEF5Q92565 580 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 ARL8AQ96BM9 186 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 NSL1Q96IY1 281 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 PRMT1Q99873 361 aaKnown RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 G3BP2Q9UN86 482 aaKnown RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 PLA2G4CQ9UP65 541 aa7.83□□□□□ -1.16
USP54-210ENST00000466048 COPG1Q9Y678 874 aaKnown RBP7.83□□□□□ -1.16
USP54-210ENST00000466048 SHOX2O60902 331 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 ATP5BP06576 529 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 IL10P22301 178 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 DDX6P26196 483 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP54-210ENST00000466048 OTUD4Q01804 1114 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 DCTN2Q13561 401 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 TRADDQ15628 312 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 PKDCCQ504Y2 493 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TTMPQ5BVD1 217 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 FAM26DQ5JW98 314 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 EMC1Q8N766 993 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 JADE3Q92613 823 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TTC17Q96AE7 1141 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 CFAP36Q96G28 342 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 VPS39Q96JC1 886 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 ACBD6Q9BR61 282 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 CTNNAL1Q9UBT7 734 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 MOSPD1Q9UJG1 213 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 CFLARO15519 480 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 HNRNPRO43390 633 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 MTHFRP42898 656 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 DYNLT1P63172 113 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 ZNF252P-AS1Q0IIN9 211 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 XRCC4Q13426 336 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TRIP13Q15645 432 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 OLFML1Q6UWY5 402 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 CPNE8Q86YQ8 564 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 NUP93Q8N1F7 819 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 KLHDC9Q8NEP7 349 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TRPV1Q8NER1 839 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 OR9Q1Q8NGQ5 310 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 SLC35B2Q8TB61 432 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 SLC2A14Q8TDB8 520 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 SNRNP27Q8WVK2 155 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 ARNTL2Q8WYA1 636 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 SMG7Q92540 1137 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 SRPK1Q96SB4 655 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 CDCA3Q99618 268 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 RMI1Q9H9A7 625 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 CERS4Q9HA82 394 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 SAYSD1Q9NPB0 183 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 GIMAP4Q9NUV9 329 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 DNPEPQ9ULA0 475 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TMCO1Q9UM00 188 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 LZTS1Q9Y250 596 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 RAD54BQ9Y620 910 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 COMMD3-BMI1R4GMX3 469 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 HACD1B0YJ81 288 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 HSPA4LO95757 839 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 RPL34P49207 117 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 CACNA2D1P54289 1103 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 YWHAZP63104 245 aaKnown RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 RAB42Q8N4Z0 105 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 ACTL9Q8TC94 416 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 WDR60Q8WVS4 1066 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 IRGQQ8WZA9 623 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 RPRD1AQ96P16 312 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 RBM15Q96T37 977 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP54-210ENST00000466048 ATAD3AQ9NVI7 634 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 BFARQ9NZS9 450 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 CYTH4Q9UIA0 394 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 DNMT3LQ9UJW3 386 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 NEU2Q9Y3R4 380 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.82□□□□□ -1.16
USP54-210ENST00000466048 ADAMTS4O75173 837 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 TCEA3O75764 348 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 PTPN2P17706 415 aa7.82□□□□□ -1.16
USP54-210ENST00000466048 NOS2P35228 1153 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms