RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 VAPBO95292 243 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 CCDC130P13994 396 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 CCR1P32246 355 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 PSME3P61289 254 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 FOLH1Q04609 750 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 PGS1Q32NB8 556 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 CLNKQ7Z7G1 428 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 PCSK9Q8NBP7 692 aaKnown RBP19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 ZNF670Q9BS34 389 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 PORCNQ9H237 461 aa19.33■□□□□ 0.68
CCDC88B-204ENST00000463837 HDAC3O15379 428 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 MAGEC1O60732 1142 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 CBFA2T3O75081 653 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ATG7O95352 703 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 SNRPB2P08579 225 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 MZF1P28698 734 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 BTN2A2Q8WVV5 523 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 DHX33Q9H6R0 707 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ACP6Q9NPH0 428 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 FGFR3P22607 806 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 BROXQ5VW32 411 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ILDR2Q71H61 639 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 FAM126BQ8IXS8 530 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 HSD3B7Q9H2F3 369 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ERBB2P04626 1255 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 SLC2A4P14672 509 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ST13P50502 369 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 TNK2Q07912 1038 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 BFSP2Q13515 415 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 PCID2Q5JVF3 399 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 C9orf131Q5VYM1 1079 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 FNDC5Q8NAU1 212 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 TMEM161BQ8NDZ6 487 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 RTKNQ9BST9 563 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 SAE1Q9UBE0 346 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 DOLKQ9UPQ8 538 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 A0A087WZ62 844 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 TGFB1I1O43294 461 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 LBPP18428 481 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ATP5F1P24539 256 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 NUMBP49757 651 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 TRAF3Q13114 568 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 KRT73Q86Y46 540 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 FDXACB1Q9BRP7 624 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 ELOVL6Q9H5J4 265 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 NOL6Q9H6R4 1146 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 CDHR5Q9HBB8 845 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 CNGB3Q9NQW8 809 aa19.32■□□□□ 0.68
CCDC88B-204ENST00000463837 E5RJQ4 531 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 H7C4K7 107 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 TRAFD1O14545 582 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 TSC22D2O75157 780 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 LRG1P02750 347 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ANXA6P08133 673 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 COL9A3Q14050 684 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 RSBN1Q5VWQ0 802 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 RBM44Q6ZP01 1051 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 C19orf18Q8NEA5 215 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ERVK-5Q9HDB9 667 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 C8orf4Q9NR00 106 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 KRT84Q9NSB2 600 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 UTP6Q9NYH9 597 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 VEGFAP15692 232 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ARL4DP49703 201 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 PWWP2AQ96N64 755 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 C6orf62Q9GZU0 229 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 GBA2Q9HCG7 927 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ABI2Q9NYB9 513 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 NOL4O94818 638 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 CHI3L1P36222 383 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 UNC93AQ86WB7 457 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ECHDC2Q86YB7 292 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ADHFE1Q8IWW8 467 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 TISP43B9A030 160 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 RAD51BO15315 384 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 HS6ST1O60243 411 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 RTP1P59025 263 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 DMPKQ09013 629 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ADIGQ0VDE8 80 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 DPYSQ14117 519 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 PIWIL4Q7Z3Z4 852 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 DEFB106AQ8N104 65 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 SMAD5Q99717 465 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 HSD17B14Q9BPX1 270 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 ARL8BQ9NVJ2 186 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 LIMD1Q9UGP4 676 aa19.31■□□□□ 0.68
CCDC88B-204ENST00000463837 PTGES3LE9PB15 166 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 SPATA31C1P0DKV0 1188 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 ERVK-10P10266 1014 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 PTP4A2Q12974 167 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 TTC7BQ86TV6 843 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 PCDH20Q8N6Y1 951 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 ADCY4Q8NFM4 1077 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 PACSIN3Q9UKS6 424 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 USP20Q9Y2K6 914 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 C5orf60A6NFR6 353 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 SYNCRIPO60506 623 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 SERPINF2P08697 491 aa19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 LTA4HP09960 611 aaKnown RBP19.3■□□□□ 0.68
CCDC88B-204ENST00000463837 DSG3P32926 999 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms