RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NEU3Q9UQ49 428 aa20.3■□□□□ 0.84
COL9A3-204ENST00000463487 ATG2BQ96BY7 2078 aa20.3■□□□□ 0.84
COL9A3-204ENST00000463487 GOT1P17174 413 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 HOXA6P31267 233 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 YBEYP58557 167 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-204ENST00000463487 POLD3Q15054 466 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-204ENST00000463487 IL31Q6EBC2 164 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 RETSATQ6NUM9 610 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 ZC3H14Q6PJT7 736 aaKnown RBP20.29■□□□□ 0.84
COL9A3-204ENST00000463487 LZTR1Q8N653 840 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 TPCN2Q8NHX9 752 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 CALN1Q9BXU9 219 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 MAGEB5Q9BZ81 275 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 FBRSQ9HAH7 460 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 PCDH18Q9HCL0 1135 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 CWC15Q9P013 229 aaKnown RBP20.29■□□□□ 0.84
COL9A3-204ENST00000463487 ZNF212Q9UDV6 495 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 SUN2Q9UH99 717 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 TFR2Q9UP52 801 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 ERVW-1Q9UQF0 538 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 OR51B4Q9Y5P0 310 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 ADGRG1Q9Y653 693 aa20.29■□□□□ 0.84
COL9A3-204ENST00000463487 CXorf51AA0A1B0GTR3 108 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 RCCD1A6NED2 376 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 PSTPIP1O43586 416 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 BUB1O43683 1085 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 EPHX1P07099 455 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 CHRM1P11229 460 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-204ENST00000463487 COMTP21964 271 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 SERPINB6P35237 376 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 IL12RB1P42701 662 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 WASP42768 502 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 NDST2P52849 883 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 TAS2R40P59535 323 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 CCZ1BP86790 482 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 CCZ1P86791 482 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ENPP2Q13822 863 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 TMCO3Q6UWJ1 677 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 SYCE1Q8N0S2 351 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 OR52K2Q8NGK3 314 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ALG14Q96F25 216 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 CSPG4P5Q96PW8 444 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ACOX2Q99424 681 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ZNF670Q9BS34 389 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 LACRTQ9GZZ8 138 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ZDHHC4Q9NPG8 344 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 BCCIPQ9P287 314 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL9A3-204ENST00000463487 ALG6Q9Y672 507 aa20.28■□□□□ 0.84
COL9A3-204ENST00000463487 A0A0D9SEW6 157 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 CCDC163A0A0D9SF12 145 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 MACROD2A1Z1Q3 448 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 ZSCAN5CA6NGD5 496 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-204ENST00000463487 CBX4O00257 560 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 ADAM23O75077 832 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 ERCC2P18074 760 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 VASPP50552 380 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-204ENST00000463487 SLC20A2Q08357 652 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 PTPRNQ16849 979 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 ARTNQ5T4W7 220 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 TXNRD3NBQ6F5E7 133 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 METTL3Q86U44 580 aaKnown RBP20.27■□□□□ 0.84
COL9A3-204ENST00000463487 UMODL1-AS1Q8N2C9 162 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 RNF10Q8N5U6 811 aaKnown RBP20.27■□□□□ 0.84
COL9A3-204ENST00000463487 OR7D4Q8NG98 312 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 KIAA1524Q8TCG1 905 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 PDLIM2Q96JY6 352 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 HHIPQ96QV1 700 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 TMEM245Q9H330 911 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 VPS51Q9UID3 782 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 HCN2Q9UL51 889 aa20.27■□□□□ 0.84
COL9A3-204ENST00000463487 MYO18AQ92614 2054 aaKnown RBP20.26■□□□□ 0.83
COL9A3-204ENST00000463487 TCRBV21S2A2A0A5A6 115 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 ARHGAP42A6NI28 874 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 K7ESF4 209 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 KRT1P04264 644 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 SP9P0CG40 484 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 TNNT1P13805 278 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 CLCN6P51797 869 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 DPYSQ14117 519 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 VSIG1Q86XK7 387 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 MAML2Q8IZL2 1156 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-204ENST00000463487 PGBD3Q8N328 593 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 FAM71BQ8TC56 605 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 ARHGEF2Q92974 986 aaKnown RBP20.26■□□□□ 0.83
COL9A3-204ENST00000463487 CCDC114Q96M63 670 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 HS3ST2Q9Y278 367 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 DUSP10Q9Y6W6 482 aa20.26■□□□□ 0.83
COL9A3-204ENST00000463487 EDDM13A0A1B0GTR0 161 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 LRRD1A4D1F6 860 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ANTXRLA6NF34 631 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ZNF487B1APH4 448 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 PRKCHP24723 683 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 CTSOP43234 321 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-204ENST00000463487 CCDC173Q0VFZ6 552 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 DPYSL3Q14195 570 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ACCSLQ4AC99 568 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 ANO7Q6IWH7 933 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 TSSK4Q6SA08 328 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 TMEM92Q6UXU6 159 aa20.25■□□□□ 0.83
COL9A3-204ENST00000463487 CPNE8Q86YQ8 564 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms