RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 CYS1Q717R9 158 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 BZW1Q7L1Q6 419 aaKnown RBP10.17□□□□□ -0.78
PTPRD-207ENST00000463477 ZC3H18Q86VM9 953 aaKnown RBP10.17□□□□□ -0.78
PTPRD-207ENST00000463477 CHSY1Q86X52 802 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 CCDC63Q8NA47 563 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 LEMD2Q8NC56 503 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 LRRC8CQ8TDW0 803 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 NXPE3Q969Y0 559 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 TNIP3Q96KP6 325 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 QKIQ96PU8 341 aaKnown RBP eCLIP10.17□□□□□ -0.78
PTPRD-207ENST00000463477 MYADMQ96S97 322 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 EPHX3Q9H6B9 360 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 C10orf88Q9H8K7 445 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 FAM49BQ9NUQ9 324 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 TMLHEQ9NVH6 421 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 HCFC1R1Q9NWW0 138 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 PCDHB5Q9Y5E4 795 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 USH1CQ9Y6N9 552 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 C2orf16Q68DN1 1984 aa10.17□□□□□ -0.78
PTPRD-207ENST00000463477 TRIOO75962 3097 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 A0A1W2PPM1 405 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 TCRBV9S1A1TA0A576 114 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 MYBPHLA2RUH7 354 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 XPO1O14980 1071 aaKnown RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CHUKO15111 745 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 KCNN4O15554 427 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SPAG7O75391 227 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 BANF1O75531 89 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 GRAP2O75791 330 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 C1QAP02745 245 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 PDGFRBP09619 1106 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 DHRS4L1P0CG22 281 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 HAPLN1P10915 354 aaPredicted RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CCNB1P14635 433 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 KRT4P19013 534 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 PRKCHP24723 683 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 ACAT1P24752 427 aaKnown RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CYP2F1P24903 491 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 NCALDP61601 193 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 YWHAZP63104 245 aaKnown RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 ATP11AP98196 1134 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CDK16Q00536 496 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SLC1A5Q15758 541 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 RAB6CQ53S08 254 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 HP1BP3Q5SSJ5 553 aaPredicted RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SCYL2Q6P3W7 929 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SH2D5Q6ZV89 423 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 BNIPLQ7Z465 357 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 DNAJB7Q7Z6W7 309 aaPredicted RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SCUBE3Q8IX30 993 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 PARP9Q8IXQ6 854 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 ZNF276Q8N554 614 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 TTC9BQ8N6N2 239 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 ITFG1Q8TB96 612 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 KCTD13Q8WZ19 329 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 FGF13Q92913 245 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 PSMG2Q969U7 264 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 FUBP3Q96I24 572 aaKnown RBP eCLIP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 HNRNPABQ99729 332 aaKnown RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CORO1BQ9BR76 489 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 LRRC3Q9BY71 257 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 RAB6CQ9H0N0 254 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 SNX25Q9H3E2 840 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 KIF9Q9HAQ2 790 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 RAB6BQ9NRW1 208 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 ETNK2Q9NVF9 386 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 MKS1Q9NXB0 559 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 IGSF9Q9P2J2 1179 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 MUTYHQ9UIF7 546 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CDH7Q9ULB5 785 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 PHTF1Q9UMS5 762 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 CHMP2BQ9UQN3 213 aa10.16□□□□□ -0.78
PTPRD-207ENST00000463477 MYO18AQ92614 2054 aaKnown RBP10.16□□□□□ -0.78
PTPRD-207ENST00000463477 HCRTO43612 131 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 DAB1O75553 588 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 DCTN3O75935 186 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 RBL1P28749 1068 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 ALDH3A1P30838 453 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 MATKP42679 507 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 ELF3P78545 371 aaPredicted RBP10.15□□□□□ -0.78
PTPRD-207ENST00000463477 ZKSCAN8Q15776 578 aaPredicted RBP10.15□□□□□ -0.78
PTPRD-207ENST00000463477 SNCBQ16143 134 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 CA9Q16790 459 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 MGAT5BQ3V5L5 792 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 PRSS36Q5K4E3 855 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 C1orf228Q6PIY5 440 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 LVRNQ6Q4G3 990 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 C4orf50Q6ZRC1 276 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 CAPN12Q6ZSI9 719 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 ASRGL1Q7L266 308 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 ITIH5Q86UX2 942 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 SLC26A11Q86WA9 606 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 IGDCC3Q8IVU1 814 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 C4orf33Q8N1A6 199 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 FITM2Q8N6M3 262 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 EDAQ92838 391 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 NT5C3BQ969T7 300 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 APOPT1Q96IL0 206 aa10.15□□□□□ -0.78
PTPRD-207ENST00000463477 SYT15Q9BQS2 421 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms