RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PPP1R13BQ96KQ4 1090 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 RPRD1AQ96P16 312 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-204ENST00000462475 SPAG5Q96R06 1193 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 APEX2Q9UBZ4 518 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 AJAP1Q9UKB5 411 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-204ENST00000462475 ADAMTS20P59510 1910 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3DA0A087WVF3 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3IA0A087WXS9 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3EA0A087X179 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3KA0A087X1G2 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3FA6NER0 549 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3LB9A6J9 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 ENC1O14682 589 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 HSF2BPO75031 334 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 FGFR1OPO95684 399 aaKnown RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 ITGAVP06756 1048 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3HP0C7X1 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 SLC2A3P11169 496 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 EPHA8P29322 1005 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 DNAJC3Q13217 504 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 AUHQ13825 339 aaKnown RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 POM121L1PQ3SYA9 428 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 OTUD1Q5VV17 481 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3GQ6DHY5 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3CQ6IPX1 549 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 NAPEPLDQ6IQ20 393 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 OLFML1Q6UWY5 402 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 CREBRFQ8IUR6 639 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TBC1D3Q8IZP1 549 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 HNRNPLLQ8WVV9 542 aaKnown RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 RNF34Q969K3 372 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 CNDP2Q96KP4 475 aaKnown RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 ASNSD1Q9NWL6 643 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 VANGL2Q9ULK5 521 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 HS3ST4Q9Y661 456 aa16.57■□□□□ 0.24
COL7A1-204ENST00000462475 TP53BP1Q12888 1972 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-204ENST00000462475 IGSF10Q6WRI0 2623 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 TLR4O00206 839 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 ATP9BO43861 1147 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 LDOC1O95751 146 aaPredicted RBP16.56■□□□□ 0.24
COL7A1-204ENST00000462475 ERBB2P04626 1255 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 MAT2AP31153 395 aaKnown RBP16.56■□□□□ 0.24
COL7A1-204ENST00000462475 NME3Q13232 169 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 EFHC1Q5JVL4 640 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 OR6B2Q6IFH4 312 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 GBP6Q6ZN66 633 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 Q6ZVU0 165 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 C14orf80Q86SX3 495 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 SPATS2Q86XZ4 545 aaKnown RBP16.56■□□□□ 0.24
COL7A1-204ENST00000462475 EID2Q8N6I1 236 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 OR8D1Q8WZ84 308 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 FAM81BQ96LP2 452 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 FEM1AQ9BSK4 669 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 ARHGAP20Q9P2F6 1191 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 RWDD2AQ9UIY3 292 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 SLC25A13Q9UJS0 675 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 TPX2Q9ULW0 747 aaKnown RBP16.56■□□□□ 0.24
COL7A1-204ENST00000462475 PCDHGC3Q9UN70 934 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 OR51B4Q9Y5P0 310 aa16.56■□□□□ 0.24
COL7A1-204ENST00000462475 COL5A1P20908 1838 aaPredicted RBP16.56■□□□□ 0.24
COL7A1-204ENST00000462475 FASNP49327 2511 aaKnown RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 YKT6O15498 198 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PLRG1O43660 514 aaKnown RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 DAB1O75553 588 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PNMA6AP0CW24 399 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PON1P27169 355 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 ARRB1P49407 418 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 ACADVLP49748 655 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 VASPP50552 380 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 OXCT1P55809 520 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 CNTN1Q12860 1018 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 BNIP3Q12983 259 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 DLG2Q15700 870 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 EXOC3L4Q17RC7 722 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 ACCSLQ4AC99 568 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PTPN20Q4JDL3 420 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 SLC45A4Q5BKX6 768 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 AGBL4Q5VU57 503 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 C11orf57Q6ZUT1 292 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 DSG4Q86SJ6 1040 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 IRF2BP1Q8IU81 584 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PDCD7Q8N8D1 485 aaKnown RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 SIX2Q9NPC8 291 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PLCB1Q9NQ66 1216 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 ANLNQ9NQW6 1124 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 VPS28Q9UK41 221 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PPM1HQ9ULR3 514 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 PCDHGA1Q9Y5H4 931 aa16.55■□□□□ 0.24
COL7A1-204ENST00000462475 GOLGA4Q13439 2230 aaKnown RBP16.55■□□□□ 0.24
COL7A1-204ENST00000462475 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 GTPBP10A4D1E9 387 aaKnown RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 I6L893 689 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 SLC7A4O43246 635 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 BNIP3LO60238 219 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 PAGE1O75459 146 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 RFPL3O75679 317 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 TFE3P19532 575 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 ZNF177Q13360 481 aaPredicted RBP16.54■□□□□ 0.24
COL7A1-204ENST00000462475 SFMBT2Q5VUG0 894 aa16.54■□□□□ 0.24
COL7A1-204ENST00000462475 FAM46CQ5VWP2 391 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms