RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LRRC31Q6UY01 552 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 OR2T34Q8NGX1 318 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 C1orf216Q8TAB5 229 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 SLC20A1Q8WUM9 679 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 CPA5Q8WXQ8 436 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 OR8D1Q8WZ84 308 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 PTPRN2Q92932 1015 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 NT5C3BQ969T7 300 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 PCMTD1Q96MG8 357 aaPredicted RBP14.34□□□□□ -0.11
USP4-206ENST00000461553 TM9SF3Q9HD45 589 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 NLRC4Q9NPP4 1024 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 METTL5Q9NRN9 209 aaKnown RBP14.34□□□□□ -0.11
USP4-206ENST00000461553 TM7SF3Q9NS93 570 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 FANCLQ9NW38 375 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 ADAMTS1Q9UHI8 967 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 NOCTQ9UK39 431 aaKnown RBP14.34□□□□□ -0.11
USP4-206ENST00000461553 FNDC3AQ9Y2H6 1198 aaKnown RBP14.34□□□□□ -0.11
USP4-206ENST00000461553 SLCO1B1Q9Y6L6 691 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 PTPRBP23467 1997 aa14.34□□□□□ -0.11
USP4-206ENST00000461553 WDFY3Q8IZQ1 3526 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 C1QTNF3-AMACRE9PGA6 284 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 SH3BP5O60239 455 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 TRIM16O95361 564 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 IGHV4-34P06331 123 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 VAV1P15498 845 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 GOT1P17174 413 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 VASPP50552 380 aaPredicted RBP14.33□□□□□ -0.12
USP4-206ENST00000461553 COPB1P53618 953 aaKnown RBP14.33□□□□□ -0.12
USP4-206ENST00000461553 ADPRHP54922 357 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 JAM2P57087 298 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 KRT83P78385 493 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 CDR2Q01850 454 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 BNC1Q01954 994 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 ZNF423Q2M1K9 1284 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 HLA-BQ31612 363 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 CCDC183Q5T5S1 534 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 LAYNQ6UX15 382 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 TRIM72Q6ZMU5 477 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 C14orf80Q86SX3 495 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 AADATQ8N5Z0 425 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 NEK11Q8NG66 645 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 OR52K2Q8NGK3 314 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 CFAP57Q96MR6 1250 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 FEM1AQ9BSK4 669 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 C2orf49Q9BVC5 232 aaPredicted RBP14.33□□□□□ -0.12
USP4-206ENST00000461553 NEUROG2Q9H2A3 272 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 IL21RQ9HBE5 538 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 TPX2Q9ULW0 747 aaKnown RBP14.33□□□□□ -0.12
USP4-206ENST00000461553 TBC1D30Q9Y2I9 924 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 AKAP13Q12802 2813 aa14.33□□□□□ -0.12
USP4-206ENST00000461553 A0A1W2PPC4 97 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 LGALS16A8MUM7 142 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 EPHB6O15197 1021 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ALOX15BO15296 676 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 FLRT2O43155 660 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 HYAL3O43820 417 aaPredicted RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 ATP9BO43861 1147 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 CNTN5O94779 1100 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ZNF18P17022 549 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SPINK2P20155 84 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 STAT1P42224 750 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 CCT8P50990 548 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 GALCP54803 685 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 C21orf59P57076 290 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 RACK1P63244 317 aaKnown RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 FMO1Q01740 532 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SYCP1Q15431 976 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 TRIP6Q15654 476 aaKnown RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 KIF19Q2TAC6 998 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ALFQ53S48 1182 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 C6orf118Q5T5N4 469 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 FAM46CQ5VWP2 391 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 UNQ6494/PRO21346Q6UXR6 183 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 Q6ZVU0 165 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ARCQ7LC44 396 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 TFAP2DQ7Z6R9 452 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SETD3Q86TU7 594 aaPredicted RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 SH2D3CQ8N5H7 860 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 DCAF4L2Q8NA75 395 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 OR14C36Q8NHC7 312 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SETD7Q8WTS6 366 aaKnown RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 FRS2Q8WU20 508 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SKA1Q96BD8 255 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ALG14Q96F25 216 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 CCDC114Q96M63 670 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SLC6A18Q96N87 628 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 CAMK1GQ96NX5 476 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 FAM129BQ96TA1 746 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 C11orf70Q9BRQ4 267 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SCNM1Q9BWG6 230 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ACE2Q9BYF1 805 aaPredicted RBP14.32□□□□□ -0.12
USP4-206ENST00000461553 ANLNQ9NQW6 1124 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 ANKRD6Q9Y2G4 727 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SIK3Q9Y2K2 1263 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 PCDHGB2Q9Y5G2 931 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 SNX10Q9Y5X0 201 aa14.32□□□□□ -0.12
USP4-206ENST00000461553 TRPM6Q9BX84 2022 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 E9PAM4 449 aa14.31□□□□□ -0.12
USP4-206ENST00000461553 I6L893 689 aaPredicted RBP14.31□□□□□ -0.12
USP4-206ENST00000461553 SLC7A4O43246 635 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms