RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SERPINB9P50453 376 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 PAPOLAP51003 745 aaKnown RBP13.95□□□□□ -0.18
CLK3-203ENST00000454830 MGAT5Q09328 741 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 ELAVL2Q12926 359 aaKnown RBP13.95□□□□□ -0.18
CLK3-203ENST00000454830 RSPO2Q6UXX9 243 aaPredicted RBP13.95□□□□□ -0.18
CLK3-203ENST00000454830 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.95□□□□□ -0.185e-12■■□□□ 14.3
CLK3-203ENST00000454830 ATP6V0D2Q8N8Y2 350 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLK3-203ENST00000454830 TSSK1BQ9BXA7 367 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 CCSER2Q9H7U1 834 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 NT5MQ9NPB1 228 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 PSAT1Q9Y617 370 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 KCNU1A8MYU2 1149 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 H7C4K7 107 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 FGF10O15520 208 aaPredicted RBP13.95□□□□□ -0.18
CLK3-203ENST00000454830 TLR5O60602 858 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 GSTA2P09210 222 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 KITP10721 976 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 CCL5P13501 91 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 SCTRP47872 440 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 SERPINB4P48594 390 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 TTC31Q49AM3 519 aaPredicted RBP13.95□□□□□ -0.18
CLK3-203ENST00000454830 CDHR3Q6ZTQ4 885 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 NUDCD3Q8IVD9 361 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 AZIN2Q96A70 460 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 CERS2Q96G23 380 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 C8orf48Q96LL4 319 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 RMDN2Q96LZ7 410 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 NAT9Q9BTE0 207 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 CRISPLD1Q9H336 500 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 PLAC1Q9HBJ0 212 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 MARCH5Q9NX47 278 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 RAD54BQ9Y620 910 aa13.95□□□□□ -0.18
CLK3-203ENST00000454830 THSD7BQ9C0I4 1608 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 TMEM189-UBE2V1I3L0A0 370 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 IRF1P10914 325 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 TCTN1Q2MV58 587 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 CCDC91Q7Z6B0 441 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 STRA8Q7Z7C7 330 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 GRAMD1AQ96CP6 724 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 VAT1Q99536 393 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 MLPHQ9BV36 600 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 EIF2B3Q9NR50 452 aaKnown RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 ARHGEF38Q9NXL2 777 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 GGA2Q9UJY4 613 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 FAM159BA6NKW6 160 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 CNTN5O94779 1100 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 TRIM60Q495X7 471 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 PIK3R6Q5UE93 754 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 ANKS3Q6ZW76 656 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 SPPL2BQ8TCT7 592 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 MZB1Q8WU39 189 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 CCT6BQ92526 530 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 ACTR5Q9H9F9 607 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 IARS2Q9NSE4 1012 aaKnown RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 MARCOQ9UEW3 520 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 TPP1O14773 563 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 RTN3O95197 1032 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 MAGEA3P43357 314 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 MLLT6P55198 1093 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 RPL10AP62906 217 aaKnown RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 RASIP1Q5U651 963 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 PACS1Q6VY07 963 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 OTOAQ7RTW8 1153 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 YTHDF3Q7Z739 585 aaKnown RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 TBC1D1Q86TI0 1168 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 CCNJLQ8IV13 435 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 CFAP52Q8N1V2 620 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 LZTR1Q8N653 840 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 CNTD1Q8N815 330 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 FBXO22Q8NEZ5 403 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 ARNTL2Q8WYA1 636 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 OXNAD1Q96HP4 312 aaPredicted RBP13.94□□□□□ -0.18
CLK3-203ENST00000454830 SPON2Q9BUD6 331 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 HAUS2Q9NVX0 235 aa13.94□□□□□ -0.18
CLK3-203ENST00000454830 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.93□□□□□ -0.18
CLK3-203ENST00000454830 ADAM12O43184 909 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 CDH17Q12864 832 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 GPNMBQ14956 572 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 RAPH1Q70E73 1250 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 LRRC43Q8N309 656 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 AGAP2Q99490 1192 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 CYP4F11Q9HBI6 524 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 TMEM39AQ9NV64 488 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 TLR6Q9Y2C9 796 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 COL6A1P12109 1028 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 GMPRP36959 345 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 CDK7P50613 346 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 PRMT2P55345 433 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 CHI3L2Q15782 390 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 ALFQ53S48 1182 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 ZNF449Q6P9G9 518 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 ZCCHC23Q6ZST2 131 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 CMC1Q7Z7K0 106 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 RTL3Q8N8U3 475 aaKnown RBP13.93□□□□□ -0.18
CLK3-203ENST00000454830 PTPRN2Q92932 1015 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 ERP27Q96DN0 273 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 MTBPQ96DY7 904 aa13.93□□□□□ -0.18
CLK3-203ENST00000454830 FCRL3Q96P31 734 aaPredicted RBP13.93□□□□□ -0.18
CLK3-203ENST00000454830 PLCD4Q9BRC7 762 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms