RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 ZBTB14O43829 449 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PLIN3O60664 434 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CLTBP09497 229 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SMIM10L2AP0DMW4 78 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SMIM10L2BP0DMW5 78 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 JAK3P52333 1124 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PTPN11Q06124 597 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 PCLAFQ15004 111 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PDK1Q15118 436 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 LILRA2Q8N149 483 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SLC2A11Q9BYW1 496 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 TUT1Q9H6E5 874 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 LIN28AQ9H9Z2 209 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 RSAD1Q9HA92 442 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 KIAA1671Q9BY89 1806 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 SH3PXD2BA1X283 911 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 KCNN4O15554 427 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 EIF4BP23588 611 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 GRK2P25098 689 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 ARRB2P32121 409 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CDH5P33151 784 aaPredicted RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 FLOT2Q14254 428 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 ACAP1Q15027 740 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 ZBTB41Q5SVQ8 909 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 POTEHQ6S545 545 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PATL1Q86TB9 770 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 C10orf107Q8IVU9 208 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 EMC1Q8N766 993 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 TRIML2Q8N7C3 387 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 TSPAN14Q8NG11 270 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 TFAP2BQ92481 460 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 DPF3Q92784 378 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CGRRF1Q99675 332 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 CCT7Q99832 543 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PLGRKTQ9HBL7 147 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 TJP2Q9UDY2 1190 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 PRPF19Q9UMS4 504 aaKnown RBP8.75□□□□□ -1.01
HPS4-206ENST00000439453 ATG2AQ2TAZ0 1938 aa8.75□□□□□ -1.01
HPS4-206ENST00000439453 AIM2O14862 343 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 GLRA3O75311 464 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 APRTP07741 180 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 THRAP10827 490 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ZNF23P17027 643 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 MIPP30301 263 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 MTA1Q13330 715 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 CYTH1Q15438 398 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 PTPN20Q4JDL3 420 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 LPCAT2Q7L5N7 544 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 PLPPR4Q7Z2D5 763 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 FNIP1Q8TF40 1166 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 TMIGD2Q96BF3 282 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 LRRC39Q96DD0 335 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 BIRC8Q96P09 236 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 PKP2Q99959 881 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 HAPLN2Q9GZV7 340 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 KLC2Q9H0B6 622 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 SDCBP2Q9H190 292 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 CYP26B1Q9NR63 512 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 TUBGCP4Q9UGJ1 667 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 WDR37Q9Y2I8 494 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 COL6A3P12111 3177 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 KLHL41O60662 606 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 TRUB2O95900 331 aaKnown RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 PSMC3P17980 439 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 XRCC1P18887 633 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 NUDT2P50583 147 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 THOP1P52888 689 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ABCE1P61221 599 aaKnown RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 PSMC1P62191 440 aaKnown RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 PHEXP78562 749 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 MPP3Q13368 585 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 TCTN1Q2MV58 587 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 DENND1BQ6P3S1 775 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 DHRS4L2Q6PKH6 230 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 KBTBD7Q8WVZ9 684 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 NLRP7Q8WX94 980 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ZBTB45Q96K62 511 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 LENG8Q96PV6 779 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 IMPG2Q9BZV3 1241 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 INO80BQ9C086 356 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 RRN3Q9NYV6 651 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ZNHIT2Q9UHR6 403 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 CNTNAP2Q9UHC6 1331 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 MBLAC1A4D2B0 266 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 CNTFP26441 200 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 POLR2BP30876 1174 aaKnown RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 SFNP31947 248 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 STT3AP46977 705 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ALDH3B2P48448 385 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 HARS2P49590 506 aaKnown RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 PDE1CQ14123 709 aaPredicted RBP8.74□□□□□ -1.01
HPS4-206ENST00000439453 C16orf89Q6UX73 402 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 PACS1Q6VY07 963 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 C16orf59Q7L2K0 433 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 MPP5Q8N3R9 675 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 ACMSDQ8TDX5 336 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 RSPH1Q8WYR4 309 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 SIGLEC10Q96LC7 697 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 CDRT15Q96T59 188 aa8.74□□□□□ -1.01
HPS4-206ENST00000439453 EBNA1BP2Q99848 306 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms