RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PLEKHA7Q6IQ23 1121 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 DENND1CQ8IV53 801 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 CDK20Q8IZL9 346 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ETNPPLQ8TBG4 499 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 HELQQ8TDG4 1101 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 AHCYL2Q96HN2 611 aaKnown RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 CDRT15Q96T59 188 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 AVENQ9NQS1 362 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-209ENST00000438120 FBXL21Q9UKT6 434 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 TSC22D4Q9Y3Q8 395 aa17.46■□□□□ 0.39
PTPRF-209ENST00000438120 ABL2P42684 1182 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 PKNOX1P55347 436 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 IKBKEQ14164 716 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 EPHX4Q8IUS5 362 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 GPR152Q8TDT2 470 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 FAM84AQ96KN4 292 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 RIBC2Q9H4K1 309 aa17.46■□□□□ 0.38
PTPRF-209ENST00000438120 PSMD10O75832 226 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TRUB2O95900 331 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CYP3A4P08684 503 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 RAD23AP54725 363 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 HSPA14Q0VDF9 509 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 MAD2L1Q13257 205 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TRIM25Q14258 630 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 RRP1BQ14684 758 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 NT5DC4Q86YG4 428 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CAMKK1Q8N5S9 505 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 HAS1Q92839 578 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 BTBD10Q9BSF8 475 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 RNPEPQ9H4A4 650 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 SYBUQ9NX95 663 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 OPTCQ9UBM4 332 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 SYT12Q8IV01 421 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 RSPH9Q9H1X1 276 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 PIGNO95427 931 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CSNK2BP67870 215 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 EVX2Q03828 476 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 ATAD3BQ5T9A4 648 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 MRPL17Q9NRX2 175 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 NFKBIL1Q9UBC1 381 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 VTI1BQ9UEU0 232 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CCR4P51679 360 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TBX2Q13207 712 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TMPRSS6Q8IU80 811 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CREG2Q8IUH2 290 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 KATNAL2Q8IYT4 538 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TMEM86AQ8N2M4 240 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 TSEN2Q8NCE0 465 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 RSPH1Q8WYR4 309 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 ATP6V1HQ9UI12 483 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 ANKRD6Q9Y2G4 727 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 KIF1CO43896 1103 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 NBNO60934 754 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 ATP6V1C1P21283 382 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 NOS2P35228 1153 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 FLT3P36888 993 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 PFKPQ01813 784 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 ZCCHC8Q6NZY4 707 aaKnown RBP17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CYP20A1Q6UW02 462 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 STK32CQ86UX6 486 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 COMMD2Q86X83 199 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 SUSD6Q92537 303 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 CORO1BQ9BR76 489 aa17.45■□□□□ 0.38
PTPRF-209ENST00000438120 LLGL2Q6P1M3 1020 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 VSIG10LQ86VR7 867 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 RIOX2Q8IUF8 465 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 PCDH20Q8N6Y1 951 aaKnown RBP17.44■□□□□ 0.38
PTPRF-209ENST00000438120 IL31RAQ8NI17 732 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 USP7Q93009 1102 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 DTNBP1Q96EV8 351 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NDNQ99608 321 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 KLQ9UEF7 1012 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 USP32Q8NFA0 1604 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 H0YC42 278 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 MEIS2O14770 477 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 B4GALT5O43286 388 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 TBC1D12O60347 775 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 TSC22D2O75157 780 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 FGFR3P22607 806 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 SERPINA4P29622 427 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 PARP6Q2NL67 630 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 HLA-DQA1Q5Y7H0 255 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 GDF3Q9NR23 364 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NCKAP1Q9Y2A7 1128 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 SIK3Q9Y2K2 1263 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 FKBP6O75344 327 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 PIRTP0C851 137 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 FCGR1AP12314 374 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 NPR3P17342 541 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 INSCQ1MX18 579 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 FAM45BPQ6NSW5 357 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 ZCCHC9Q8N567 271 aaKnown RBP17.44■□□□□ 0.38
PTPRF-209ENST00000438120 APBB2Q92870 758 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 PANX3Q96QZ0 392 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 ASTN1O14525 1302 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 MYPNQ86TC9 1320 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 CLDN5O00501 218 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 ZNF862O60290 1169 aa17.44■□□□□ 0.38
PTPRF-209ENST00000438120 KRT75O95678 551 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms