RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PEX5P50542 639 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 SEC13P55735 322 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 EML5Q05BV3 1969 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 CCDC173Q0VFZ6 552 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 DPYSL3Q14195 570 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 HADHQ16836 314 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 RWDD4Q6NW29 188 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 ZNF783Q6ZMS7 281 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 REXO1L1PQ8IX06 675 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 AHI1Q8N157 1196 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 RNF10Q8N5U6 811 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 DTWD2Q8NBA8 298 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 HSPH1Q92598 858 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 ANP32BQ92688 251 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 CSPG4P5Q96PW8 444 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 IER2Q9BTL4 223 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 ACE2Q9BYF1 805 aaPredicted RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 LRRC19Q9H756 370 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 ZDHHC4Q9NPG8 344 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 RCOR3Q9P2K3 495 aaPredicted RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 PPP2R2CQ9Y2T4 447 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 MFHAS1Q9Y4C4 1052 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 CAPN6Q9Y6Q1 641 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 ZNF487B1APH4 448 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 SGK1O00141 431 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 FGF10O15520 208 aaPredicted RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 MOCS3O95396 460 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 CD160O95971 181 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 RHOCP08134 193 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 DLDP09622 509 aaKnown RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 CCDC175P0C221 793 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 AMPD1P23109 780 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 KDELR1P24390 212 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 OR1E1P30953 314 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 MARCKSL1P49006 195 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 CDH6P55285 790 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 OXCT1P55809 520 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 TPI1P60174 286 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 GNA12Q03113 381 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 PDK2Q15119 407 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 HSF5Q4G112 596 aaPredicted RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 C2orf27AQ580R0 203 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 PPP6R3Q5H9R7 873 aaPredicted RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 C6orf118Q5T5N4 469 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 RNF219Q5W0B1 726 aaPredicted RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 NT5DC3Q86UY8 548 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 VSIG1Q86XK7 387 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 ARHGAP12Q8IWW6 846 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 RHOT1Q8IXI2 618 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 TXLNBQ8N3L3 684 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 ALLCQ8N6M5 410 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 NPWQ8N729 165 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 PQLC3Q8N755 202 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 OR7D4Q8NG98 312 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 RPLP0P6Q8NHW5 317 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 PCDH19Q8TAB3 1148 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 CYB5D2Q8WUJ1 264 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 KRT35Q92764 455 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 ARHGEF2Q92974 986 aaKnown RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 GABRG3Q99928 467 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 TMEM245Q9H330 911 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 PRMT8Q9NR22 394 aaPredicted RBP12.74□□□□□ -0.37
USP40-205ENST00000430158 KLHL11Q9NVR0 708 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 MMP17Q9ULZ9 603 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 SPAG17Q6Q759 2223 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 NUMA1Q14980 2115 aa12.74□□□□□ -0.37
USP40-205ENST00000430158 ABCA7Q8IZY2 2146 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 SHROOM3Q8TF72 1996 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 A0A1W2PQF6 199 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 MACROD2A1Z1Q3 448 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 WASH3PC4AMC7 463 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 H3BRJ5 948 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 K7ESF4 209 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 NPC1O15118 1278 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 PSTPIP1O43586 416 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 SNAP91O60641 907 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 PALMO75781 387 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 KLF8O95600 359 aaPredicted RBP12.73□□□□□ -0.37
USP40-205ENST00000430158 GLDCP23378 1020 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 CTNNA2P26232 953 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 ACVRL1P37023 503 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 IL12RB1P42701 662 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 SSR1P43307 286 aaKnown RBP12.73□□□□□ -0.37
USP40-205ENST00000430158 ZNF234Q14588 700 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 SYT13Q7L8C5 426 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 DAAM2Q86T65 1068 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 TP53INP2Q8IXH6 220 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 KATNAL2Q8IYT4 538 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 CCDC33Q8N5R6 958 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 ZNF513Q8N8E2 541 aaPredicted RBP12.73□□□□□ -0.37
USP40-205ENST00000430158 KDM1BQ8NB78 822 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 TXNDC5Q8NBS9 432 aaKnown RBP12.73□□□□□ -0.37
USP40-205ENST00000430158 CCDC26Q8TAB7 109 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 KIAA1524Q8TCG1 905 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 NELL1Q92832 810 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 ZNF670Q9BS34 389 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 MAGEH1Q9H213 219 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 CATSPERBQ9H7T0 1116 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 DNAI1Q9UI46 699 aa12.73□□□□□ -0.37
USP40-205ENST00000430158 VPS51Q9UID3 782 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms