RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 TNS4Q8IZW8 715 aa10□□□□□ -0.81
CD44-206ENST00000415148 SERBP1Q8NC51 408 aaKnown RBP eCLIP10□□□□□ -0.81
CD44-206ENST00000415148 PPTC7Q8NI37 304 aa10□□□□□ -0.81
CD44-206ENST00000415148 SLC7A14Q8TBB6 771 aa10□□□□□ -0.81
CD44-206ENST00000415148 ADAM32Q8TC27 787 aa10□□□□□ -0.81
CD44-206ENST00000415148 RNF139Q8WU17 664 aa10□□□□□ -0.81
CD44-206ENST00000415148 UPF1Q92900 1129 aaKnown RBP eCLIP10□□□□□ -0.81
CD44-206ENST00000415148 MPP4Q96JB8 637 aa10□□□□□ -0.81
CD44-206ENST00000415148 PPP1R36Q96LQ0 422 aa10□□□□□ -0.81
CD44-206ENST00000415148 SLC9A7Q96T83 725 aa10□□□□□ -0.81
CD44-206ENST00000415148 EPB41L1Q9H4G0 881 aa10□□□□□ -0.81
CD44-206ENST00000415148 GDAP2Q9NXN4 497 aa10□□□□□ -0.81
CD44-206ENST00000415148 C15orf38-AP3S2A0A0A6YYH1 394 aa10□□□□□ -0.81
CD44-206ENST00000415148 E9PBE3 544 aa10□□□□□ -0.81
CD44-206ENST00000415148 AP3B1O00203 1094 aa10□□□□□ -0.81
CD44-206ENST00000415148 TIMM44O43615 452 aa10□□□□□ -0.81
CD44-206ENST00000415148 KLHL41O60662 606 aa10□□□□□ -0.81
CD44-206ENST00000415148 AP2A1O95782 977 aa10□□□□□ -0.81
CD44-206ENST00000415148 CD4P01730 458 aa10□□□□□ -0.81
CD44-206ENST00000415148 MLH1P40692 756 aa10□□□□□ -0.81
CD44-206ENST00000415148 HCAR3P49019 387 aa10□□□□□ -0.81
CD44-206ENST00000415148 NPY2RP49146 381 aa10□□□□□ -0.81
CD44-206ENST00000415148 SULT1E1P49888 294 aa10□□□□□ -0.81
CD44-206ENST00000415148 GRAMD1BQ3KR37 738 aa10□□□□□ -0.81
CD44-206ENST00000415148 SLC9B1Q4ZJI4 515 aa10□□□□□ -0.81
CD44-206ENST00000415148 OGFRL1Q5TC84 451 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 SLC27A1Q6PCB7 646 aa10□□□□□ -0.81
CD44-206ENST00000415148 C16orf89Q6UX73 402 aa10□□□□□ -0.81
CD44-206ENST00000415148 PID1Q7Z2X4 250 aa10□□□□□ -0.81
CD44-206ENST00000415148 ARPINQ7Z6K5 226 aa10□□□□□ -0.81
CD44-206ENST00000415148 CMC1Q7Z7K0 106 aa10□□□□□ -0.81
CD44-206ENST00000415148 SETD3Q86TU7 594 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 DEFB106AQ8N104 65 aa10□□□□□ -0.81
CD44-206ENST00000415148 PLD6Q8N2A8 252 aaKnown RBP10□□□□□ -0.81
CD44-206ENST00000415148 PYROXD2Q8N2H3 581 aa10□□□□□ -0.81
CD44-206ENST00000415148 CCNYQ8ND76 341 aa10□□□□□ -0.81
CD44-206ENST00000415148 ZMAT2Q96NC0 199 aaKnown RBP10□□□□□ -0.81
CD44-206ENST00000415148 FCRL3Q96P31 734 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 PHF12Q96QT6 1004 aa10□□□□□ -0.81
CD44-206ENST00000415148 NPY6RQ99463 290 aa10□□□□□ -0.81
CD44-206ENST00000415148 ILKAPQ9H0C8 392 aaPredicted RBP10□□□□□ -0.81
CD44-206ENST00000415148 R3HDMLQ9H3Y0 253 aa10□□□□□ -0.81
CD44-206ENST00000415148 DPEP3Q9H4B8 488 aa10□□□□□ -0.81
CD44-206ENST00000415148 PRDM12Q9H4Q4 367 aa10□□□□□ -0.81
CD44-206ENST00000415148 PREBQ9HCU5 417 aa10□□□□□ -0.81
CD44-206ENST00000415148 CASS4Q9NQ75 786 aa10□□□□□ -0.81
CD44-206ENST00000415148 PDGFCQ9NRA1 345 aa10□□□□□ -0.81
CD44-206ENST00000415148 BFARQ9NZS9 450 aa10□□□□□ -0.81
CD44-206ENST00000415148 STK39Q9UEW8 545 aa10□□□□□ -0.81
CD44-206ENST00000415148 PSMD13Q9UNM6 376 aa10□□□□□ -0.81
CD44-206ENST00000415148 ANKRD6Q9Y2G4 727 aa10□□□□□ -0.81
CD44-206ENST00000415148 COMMD3-BMI1R4GMX3 469 aa10□□□□□ -0.81
CD44-206ENST00000415148 hCG_2014768A0A024R1R8 64 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 RBM47A0AV96 593 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 RGSL1A5PLK6 1076 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SLCO1B7G3V0H7 640 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 PIRO00625 290 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 MTSS1O43312 755 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 DENRO43583 198 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 TFAP2AP05549 437 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 DNAJB2P25686 324 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ADORA2BP29275 332 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 PNPLA4P41247 253 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SNAPC2Q13487 334 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 DPYSQ14117 519 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 PDCD2Q16342 344 aaPredicted RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 Q3C1V9 767 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 INTS6LQ5JSJ4 861 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 FSTL4Q6MZW2 842 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 LIMS2Q7Z4I7 341 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 STRA8Q7Z7C7 330 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 CPSF7Q8N684 471 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 ICA1LQ8NDH6 482 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SHCBP1Q8NEM2 672 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 RP9Q8TA86 221 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 OPTNQ96CV9 577 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ATXN7L3BQ96GX2 97 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SNX25Q9H3E2 840 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 NSMCE4AQ9NXX6 385 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SNTG2Q9NY99 539 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 STAP1Q9ULZ2 295 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 UBQLN1Q9UMX0 589 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 HES2Q9Y543 173 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 A0A096LPK6 155 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ZCWPW2A0A1B0GU75 182 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 SMIM31A0A1B0GVY4 71 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 PPEF2O14830 753 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 AMHP03971 560 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 FAM163BP0C2L3 166 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 CHN2P52757 468 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 USP46P62068 366 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ANKRD20A4Q4UJ75 823 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 FBXO47Q5MNV8 452 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 BSPRYQ5W0U4 402 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 FAM219BQ5XKK7 198 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ZFP1Q6P2D0 407 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 RBM44Q6ZP01 1051 aaKnown RBP9.99□□□□□ -0.81
CD44-206ENST00000415148 FAM131BQ86XD5 332 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 RNF148Q8N7C7 305 aa9.99□□□□□ -0.81
CD44-206ENST00000415148 ZNF781Q8N8C0 355 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms