RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SGCDQ92629 289 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 TMEM159Q96B96 161 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ASB2Q96Q27 587 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ATMINO43313 823 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 RHOBTB3O94955 611 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM153BP0C7A2 387 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PTPN5P54829 565 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ACTR3P61158 418 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ADAM17P78536 824 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 IER5Q5VY09 327 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 DGLUCYQ7Z3D6 616 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 STAP2Q9UGK3 403 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 C3orf18Q9UK00 162 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 CYP2C8P10632 490 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 STOMP27105 288 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 USP11P51784 963 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PREPLQ4J6C6 727 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PLCZ1Q86YW0 608 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 OR52K2Q8NGK3 314 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 FEZF2Q8TBJ5 459 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 TRNT1Q96Q11 434 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 DNAJC11Q9NVH1 559 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 DMGDHQ9UI17 866 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 MROH7-TTC4A0A0A0MT08 1334 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ATXN2Q99700 1313 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PPEF2O14830 753 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 FGFR1P11362 822 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 DLG4P78352 724 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 QSOX2Q6ZRP7 698 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 HERC6Q8IVU3 1022 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 HTRA1Q92743 480 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 MID1IP1Q9NPA3 183 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PNPLA3Q9NST1 481 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 MUTP22033 750 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF549Q6P9A3 640 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 FBXO39Q8N4B4 442 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 C11orf24Q96F05 449 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 TRNAU1APQ9NX07 287 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L15C9J2P7 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L13C9JLJ4 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L11C9JVI0 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L18D6R9N7 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L22D6RA61 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L17D6RBQ6 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L19D6RCP7 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L20D6RJB6 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 IFNGP01579 166 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 UCHL3P15374 230 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L24Q0WX57 530 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 USP17L6PQ6QN14 398 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 NUAK1O60285 661 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 FNBP1LQ5T0N5 605 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 DNAJC14Q6Y2X3 702 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 SPACA7Q96KW9 195 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 NDOR1Q9UHB4 597 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 DDX20Q9UHI6 824 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM240BA0A1B0GVZ2 78 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 EPHB2P29323 1055 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PAPD7Q5XG87 772 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 C11orf63Q6NUN7 778 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 OR6J1Q8NGC5 347 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 RUSC1Q9BVN2 902 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 DBNDD1Q9H9R9 158 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 TRPV5Q9NQA5 729 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 ANGPT4Q9Y264 503 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 ANKARQ7Z5J8 1434 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 TTC34A8MYJ7 566 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 BMP7P18075 431 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 DNAJC10Q8IXB1 793 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PLEKHF1Q96S99 279 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 TMEM8AQ9HCN3 771 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 BARHL2Q9NY43 387 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDHGB3Q9Y5G1 929 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 KBTBD13C9JR72 458 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 GH2P01242 217 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 ROR2Q01974 943 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 TNK2Q07912 1038 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 GPAT2Q6NUI2 795 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 AAASQ9NRG9 546 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDHA10Q9Y5I2 948 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PMF1-BGLAPU3KQ54 211 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 TEX14Q8IWB6 1497 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 CASKO14936 926 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 SNRPFP62306 86 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 EIF5AP63241 154 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 BHMTQ93088 406 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 CCDC167Q9P0B6 97 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 MSH4O15457 936 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 LCN1P1Q5VSP4 162 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 QRFPRQ96P65 431 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PHF12Q96QT6 1004 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 CCNB1IP1Q9NPC3 277 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF639Q9UID6 485 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 OR2AT4A6NND4 320 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 SGTAO43765 313 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 MED24O75448 989 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 LACTB2Q53H82 288 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 PAGE2BQ5JRK9 111 aa13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 CHERPQ8IWX8 916 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-204ENST00000413716 KAT2BQ92831 832 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms