RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 NEK3P51956 506 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 PSMD5Q16401 504 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 SPANXN3Q5MJ09 141 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 ARTNQ5T4W7 220 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 RASIP1Q5U651 963 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 CES3Q6UWW8 571 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 MARK2Q7KZI7 788 aaKnown RBP21.16■□□□□ 0.98
USP39-203ENST00000409470 OTOP3Q7RTS5 596 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 CNTD1Q8N815 330 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 APOL2Q9BQE5 337 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 BEGAINQ9BUH8 593 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 MARCH2Q9P0N8 246 aa21.16■□□□□ 0.98
USP39-203ENST00000409470 FNDC1Q4ZHG4 1894 aaPredicted RBP21.15■□□□□ 0.98
USP39-203ENST00000409470 MATN3O15232 486 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 ALADP13716 330 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 LIG3P49916 1009 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 TRIP4Q15650 581 aaPredicted RBP21.15■□□□□ 0.98
USP39-203ENST00000409470 FBXO22Q8NEZ5 403 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 ZNF75CPQ92670 426 aaPredicted RBP21.15■□□□□ 0.98
USP39-203ENST00000409470 FAM111AQ96PZ2 611 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 COMMD8Q9NX08 183 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 PHTF1Q9UMS5 762 aa21.15■□□□□ 0.98
USP39-203ENST00000409470 MAGED2Q9UNF1 606 aaPredicted RBP21.15■□□□□ 0.98
USP39-203ENST00000409470 PSMD3O43242 534 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 HMBSP08397 361 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 CNTFP26441 200 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 NIPAL4Q0D2K0 466 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 MS4A13Q5J8X5 152 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 TIGD7Q6NT04 549 aaPredicted RBP21.14■□□□□ 0.98
USP39-203ENST00000409470 CGB2Q6NT52 195 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 RASSF3Q86WH2 238 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 CCT6BQ92526 530 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 SLC17A6Q9P2U8 582 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 ARL2BPQ9Y2Y0 163 aa21.14■□□□□ 0.98
USP39-203ENST00000409470 SLC12A8A0AV02 714 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 RFPL1O75677 317 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 NEBLO76041 1014 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 PAPOLAP51003 745 aaKnown RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 MGAT5Q09328 741 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 NAB1Q13506 487 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 IKBKEQ14164 716 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 SMAD1Q15797 465 aaKnown RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 USP41Q3LFD5 358 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 NAPEPLDQ6IQ20 393 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 TFAP2DQ7Z6R9 452 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 ZNF784Q8NCA9 323 aaPredicted RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 ZNF669Q96BR6 464 aaPredicted RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 BTN2A3PQ96KV6 586 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 SRPK1Q96SB4 655 aaKnown RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 ZYG11BQ9C0D3 744 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 VPS11Q9H270 941 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 KDM4CQ9H3R0 1056 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 SLCO1B3Q9NPD5 702 aa21.14■□□□□ 0.97
USP39-203ENST00000409470 AAR2Q9Y312 384 aaKnown RBP21.14■□□□□ 0.97
USP39-203ENST00000409470 SLC38A8A6NNN8 435 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 WASH4PA8MWX3 477 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 ATP9BO43861 1147 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 NPY2RP49146 381 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 CERCAMQ5T4B2 595 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 AFMIDQ63HM1 303 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 CERS2Q96G23 380 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 IL12RB2Q99665 862 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 SLC13A1Q9BZW2 595 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 ZFATQ9P243 1243 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 TXNDC16Q9P2K2 825 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 STARD13Q9Y3M8 1113 aa21.13■□□□□ 0.97
USP39-203ENST00000409470 AP3B1O00203 1094 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 ADAM12O43184 909 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 ERVK-10P10266 1014 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 NEFHP12036 1026 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 RPL17P18621 184 aaKnown RBP21.12■□□□□ 0.97
USP39-203ENST00000409470 MAGEA9P43362 315 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 KIAA1841Q6NSI8 718 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 PACS1Q6VY07 963 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 TRPM8Q7Z2W7 1104 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 LINC00523Q86TU6 105 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 LRRC49Q8IUZ0 686 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.12■□□□□ 0.97
USP39-203ENST00000409470 SPATA22Q8NHS9 363 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 TOX2Q96NM4 488 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 FCRL3Q96P31 734 aaPredicted RBP21.12■□□□□ 0.97
USP39-203ENST00000409470 PLCD4Q9BRC7 762 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 GLOD4Q9HC38 313 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 ALG13Q9NP73 1137 aaKnown RBP21.12■□□□□ 0.97
USP39-203ENST00000409470 RBM22Q9NW64 420 aaKnown RBP eCLIP21.12■□□□□ 0.97
USP39-203ENST00000409470 IL1RAPL1Q9NZN1 696 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 FNIP2Q9P278 1114 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 HMX2A2RU54 273 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 CACNG3O60359 315 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 EDF1O60869 148 aaKnown RBP21.12■□□□□ 0.97
USP39-203ENST00000409470 RHOQP17081 205 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 CDH17Q12864 832 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 RAP1GAP2Q684P5 730 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 ZNF683Q8IZ20 524 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 CCDC63Q8NA47 563 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 FCRL5Q96RD9 977 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 IL22Q9GZX6 179 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 CCSER2Q9H7U1 834 aa21.12■□□□□ 0.97
USP39-203ENST00000409470 PRDM5Q9NQX1 630 aaPredicted RBP21.12■□□□□ 0.97
USP39-203ENST00000409470 PCMTD2Q9NV79 361 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms