RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 PDLIM1O00151 329 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 MICAL2O94851 1124 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 CKMT2P17540 419 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 HDCP19113 662 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 TFE3P19532 575 aaPredicted RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 AVPR1AP37288 418 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 NR1H2P55055 460 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 ATP1A4Q13733 1029 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 STILQ15468 1287 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SWI5Q1ZZU3 235 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 MAP7D1Q3KQU3 841 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 KCNT2Q6UVM3 1135 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 TMEM192Q8IY95 271 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 NIPA2Q8N8Q9 360 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 TMEM174Q8WUU8 243 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 LRTOMTQ8WZ04 291 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SCYL1Q96KG9 808 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 KLHL32Q96NJ5 620 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 C6orf203Q9P0P8 240 aaPredicted RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SORCS3Q9UPU3 1222 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 CEPT1Q9Y6K0 416 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 FAM159BA6NKW6 160 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 PEX10O60683 326 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 LDHAP00338 332 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 GPD1P21695 349 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 XIAPP98170 497 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 B3GNT5Q9BYG0 378 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SUDS3Q9H7L9 328 aaPredicted RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 WDR41Q9HAD4 459 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 RNF146Q9NTX7 359 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 STK39Q9UEW8 545 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 LRFN2Q9ULH4 789 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 C7orf72A4D263 438 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 INO80B-WBP1J3KQ70 363 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 PLOD2O00469 737 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 DENRO43583 198 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 TSHRP16473 764 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 MX2P20592 715 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 L1CAMP32004 1257 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SERPINB9P50453 376 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 SLC5A3P53794 718 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 MPP3Q13368 585 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 LSM12Q3MHD2 195 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 MTX3Q5HYI7 312 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 ZNF667Q5HYK9 610 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 FASTKD5Q7L8L6 764 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 ZNF786Q8N393 782 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 PDCD6IPQ8WUM4 868 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 ATG4CQ96DT6 458 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 NLRP4Q96MN2 994 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 AGAP2Q99490 1192 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 C1QTNF2Q9BXJ5 285 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 INO80BQ9C086 356 aaPredicted RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 RBM38Q9H0Z9 239 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 EBF1Q9UH73 591 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 PAIP2BQ9ULR5 123 aaKnown RBP10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 EFR3BQ9Y2G0 817 aa10.09□□□□□ -0.79
PTCHD4-202ENST00000398738 TMEM233B4DJY2 109 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ENTPD3O75355 529 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CLIC3O95833 236 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 TNNC2P02585 160 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 JUNP05412 331 aaKnown RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 DPP6P42658 865 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 NDST2P52849 883 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 PITRM1Q5JRX3 1037 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 HEATR6Q6AI08 1181 aaKnown RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 XKR5Q6UX68 686 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ZNF534Q76KX8 674 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 DCLK2Q8N568 766 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 RNF149Q8NC42 400 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 SNRNP25Q9BV90 132 aaKnown RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ZNF518BQ9C0D4 1074 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 PCDHA11Q9Y5I1 949 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 SAC3D1A6NKF1 404 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CASQ2O14958 399 aaPredicted RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CXCL8P10145 99 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CYP2F1P24903 491 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 WEE1P30291 646 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ASPAP45381 313 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 NAGLUP54802 743 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 PPP1R2P3Q6NXS1 205 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 LIAT1Q6ZQX7 453 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 FAM183BPQ6ZVS7 135 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 NUP93Q8N1F7 819 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 C7orf31Q8N865 590 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 SLC29A1Q99808 456 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 FERMT1Q9BQL6 677 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 RTKNQ9BST9 563 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CDH19Q9H159 772 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 NOL11Q9H8H0 719 aaKnown RBP10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 PNPLA8Q9NP80 782 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 SNX15Q9NRS6 342 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 DCDC2Q9UHG0 476 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ZNF232Q9UNY5 417 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 CNTN6Q9UQ52 1028 aa10.08□□□□□ -0.8
PTCHD4-202ENST00000398738 ZNF195O14628 629 aa10.07□□□□□ -0.8
PTCHD4-202ENST00000398738 STBD1O95210 358 aa10.07□□□□□ -0.8
PTCHD4-202ENST00000398738 ITGB3P05106 788 aa10.07□□□□□ -0.8
PTCHD4-202ENST00000398738 ME2P23368 584 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms