RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SLC35B2Q8TB61 432 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 DEPDC1BQ8WUY9 529 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 OSCP1Q8WVF1 389 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 CELF6Q96J87 481 aaKnown RBP14.57□□□□□ -0.08
SKA1-202ENST00000398452 MUC3BQ9H195 1237 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 POMKQ9H5K3 350 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 SP110Q9HB58 689 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 TRPV4Q9HBA0 871 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 PCYOX1Q9UHG3 505 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 CDH22Q9UJ99 828 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 NR2E1Q9Y466 385 aa14.57□□□□□ -0.08
SKA1-202ENST00000398452 KCNN4O15554 427 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 MBTPS2O43462 519 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 GREM1O60565 184 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 LUC7L3O95232 432 aaKnown RBP14.56□□□□□ -0.08
SKA1-202ENST00000398452 MAP3K6O95382 1288 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 RHOXF2BP0C7M4 288 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 LAMP2P13473 410 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 KCNJ1P48048 391 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 GAD2Q05329 585 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 IL31Q6EBC2 164 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 NLRP14Q86W24 1093 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 CIR1Q86X95 450 aaPredicted RBP14.56□□□□□ -0.08
SKA1-202ENST00000398452 ZNF683Q8IZ20 524 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 BBS5Q8N3I7 341 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 NOA1Q8NC60 698 aaKnown RBP14.56□□□□□ -0.08
SKA1-202ENST00000398452 MYRIPQ8NFW9 859 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 IRF7Q92985 503 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 ATP2A3Q93084 1043 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 XPO6Q96QU8 1125 aaKnown RBP14.56□□□□□ -0.08
SKA1-202ENST00000398452 MYADMQ96S97 322 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 RHOXF2Q9BQY4 288 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 BBS2Q9BXC9 721 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 MAGEH1Q9H213 219 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 C11orf16Q9NQ32 467 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 SPHK2Q9NRA0 654 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 SEPT10Q9P0V9 454 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 ASIC3Q9UHC3 531 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 WNT6Q9Y6F9 365 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 DENND4CQ5VZ89 1909 aa14.56□□□□□ -0.08
SKA1-202ENST00000398452 ILVBLA1L0T0 632 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 BCLAF3A2AJT9 711 aaKnown RBP14.55□□□□□ -0.08
SKA1-202ENST00000398452 RASA4BC9J798 803 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 NEDD8-MDP1E9PL57 170 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 RASA4O43374 803 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 RAD51CO43502 376 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 TUBBP07437 444 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 GARSP41250 739 aaKnown RBP14.55□□□□□ -0.08
SKA1-202ENST00000398452 GNA12Q03113 381 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 ZP2Q05996 745 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 ZNF33AQ06730 810 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 GALNT2Q10471 571 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 C4orf22Q6V702 233 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 ZNF783Q6ZMS7 281 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 JAMLQ86YT9 394 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 MFSD6LQ8IWD5 586 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 CCDC13Q8IYE1 715 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 ZDHHC14Q8IZN3 488 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 CPA6Q8N4T0 437 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 HTR3CQ8WXA8 447 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 BHMTQ93088 406 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 ELSPBP1Q96BH3 223 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 LRRC45Q96CN5 670 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 HDAC11Q96DB2 347 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 PRICKLE1Q96MT3 831 aaPredicted RBP14.55□□□□□ -0.08
SKA1-202ENST00000398452 QKIQ96PU8 341 aaKnown RBP eCLIP14.55□□□□□ -0.082e-9■■■■■ 48.3
SKA1-202ENST00000398452 TMEM121Q9BTD3 319 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 LRRC1Q9BTT6 524 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 SPON2Q9BUD6 331 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 SLC39A8Q9C0K1 460 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 LHX6Q9UPM6 363 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 MFHAS1Q9Y4C4 1052 aa14.55□□□□□ -0.08
SKA1-202ENST00000398452 TTI1O43156 1089 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 ECI2O75521 394 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 HEXIM1O94992 359 aaKnown RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 KRT14P02533 472 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 PSMC3P17980 439 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 CCNCP24863 283 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 RBL1P28749 1068 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 PAPOLAP51003 745 aaKnown RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 OASLQ15646 514 aaKnown RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 ARHGEF18Q6ZSZ5 1173 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 ADHFE1Q8IWW8 467 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 IFT20Q8IY31 132 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 CCDC33Q8N5R6 958 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 ALLCQ8N6M5 410 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 NPWQ8N729 165 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 BBOF1Q8ND07 529 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 SUSD6Q92537 303 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 SLCO2A1Q92959 643 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 FAM122AQ96E09 287 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 OLFM3Q96PB7 478 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 ATP13A1Q9HD20 1204 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 PLK2Q9NYY3 685 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 KIAA1522Q9P206 1035 aaPredicted RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.54□□□□□ -0.08
SKA1-202ENST00000398452 IPO11Q9UI26 975 aaKnown RBP14.54□□□□□ -0.08
SKA1-202ENST00000398452 VPS28Q9UK41 221 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 NEU3Q9UQ49 428 aa14.54□□□□□ -0.08
SKA1-202ENST00000398452 HCN4Q9Y3Q4 1203 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms