RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ACP6Q9NPH0 428 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 SEPT11Q9NVA2 429 aaKnown RBP10.69□□□□□ -0.7
NEDD8-202ENST00000396828 KIAA1257Q9ULG3 409 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 PLA2G4CQ9UP65 541 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 NAALADL1Q9UQQ1 740 aa10.69□□□□□ -0.7
NEDD8-202ENST00000396828 TP53BP1Q12888 1972 aaPredicted RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 APC2O95996 2303 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 GOLGA8CPA6NN73 597 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 EIF3CLB5ME19 914 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 WNT9AO14904 365 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 THAP12O43422 761 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 ACSL4O60488 711 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 SIN3BO75182 1162 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 FSBPO95073 299 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 SEMA4FO95754 770 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 LATS1O95835 1130 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 LTFP02788 710 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 IGHV4-34P06331 123 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF883P0CG24 379 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 CSKP41240 450 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 TBX4P57082 545 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 PITX1P78337 314 aaPredicted RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 IL9RQ01113 521 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 CDR2Q01850 454 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 HNRNPDQ14103 355 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 SLC18A3Q16572 532 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 SYPL2Q5VXT5 272 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 DENND1BQ6P3S1 775 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 C19orf48Q6RUI8 117 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 ZNF571Q7Z3V5 609 aaPredicted RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 GLRX5Q86SX6 157 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 NOP9Q86U38 636 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 EPS8L1Q8TE68 723 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 DQX1Q8TE96 717 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 SLC39A13Q96H72 371 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 EIF3CQ99613 913 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 ADAMTS1Q9UHI8 967 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 CYTH4Q9UIA0 394 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 NOCTQ9UK39 431 aaKnown RBP10.68□□□□□ -0.7
NEDD8-202ENST00000396828 PYCARDQ9ULZ3 195 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 LHX6Q9UPM6 363 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 ANKRD6Q9Y2G4 727 aa10.68□□□□□ -0.7
NEDD8-202ENST00000396828 A0A087X0T9 212 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 TTC34A8MYJ7 566 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 H0Y8X5 98 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 DKK1O94907 266 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 LCA5LO95447 670 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 CER1O95813 267 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 DNTTP04053 509 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 FAM228BP0C875 321 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 POLR2EP19388 210 aaKnown RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 RDXP35241 583 aaKnown RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 GPD2P43304 727 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 AFF3P51826 1226 aaKnown RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 COL9A2Q14055 689 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 STILQ15468 1287 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 ASTE1Q2TB18 679 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 DCAF6Q58WW2 860 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 MS4A13Q5J8X5 152 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 MPP7Q5T2T1 576 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 TAF3Q5VWG9 929 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 PPP1R2P3Q6NXS1 205 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 TRIM72Q6ZMU5 477 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 KIAA1328Q86T90 577 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 MFN1Q8IWA4 741 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 CARNMT1Q8N4J0 409 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 FIBINQ8TAL6 211 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 KIAA1524Q8TCG1 905 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 RHBDD1Q8TEB9 315 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 IRGQQ8WZA9 623 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 TTC17Q96AE7 1141 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 BTBD1Q9H0C5 482 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 RSPH9Q9H1X1 276 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 SPTLC3Q9NUV7 552 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 TJP2Q9UDY2 1190 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 SLCO3A1Q9UIG8 710 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 PPP2R2CQ9Y2T4 447 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 CEP83Q9Y592 693 aa10.67□□□□□ -0.7
NEDD8-202ENST00000396828 FASNP49327 2511 aaKnown RBP10.67□□□□□ -0.7
NEDD8-202ENST00000396828 KALRNO60229 2985 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 GCN1Q92616 2671 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 FAM149AA5PLN7 773 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 GOLGA6L9A6NEM1 432 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 FAM47DPA6NHR8 397 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 MID1O15344 667 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PAPSS1O43252 624 aaPredicted RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 MOCS2O96007 188 aaPredicted RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 WNT1P04628 370 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 ATP5BP06576 529 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 MMEP08473 750 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 CD27P26842 260 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 CTSKP43235 329 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 RPL34P49207 117 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 SLC11A2P49281 568 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 METAP1P53582 386 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 TAF5Q15542 800 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 HNRNPA1L2Q32P51 320 aaKnown RBP10.66□□□□□ -0.7
NEDD8-202ENST00000396828 PITRM1Q5JRX3 1037 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 CCDC122Q5T0U0 273 aa10.66□□□□□ -0.7
NEDD8-202ENST00000396828 C9orf64Q5T6V5 341 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms