RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SLC22A12Q96S37 553 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 DHRS4Q9BTZ2 278 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 NACA2Q9H009 215 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 ALG13Q9NP73 1137 aaKnown RBP14.1□□□□□ -0.15
PTPRF-202ENST00000372405 ZC3H7BQ9UGR2 993 aaKnown RBP14.1□□□□□ -0.15
PTPRF-202ENST00000372405 MAFFQ9ULX9 164 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 TTLL3Q9Y4R7 772 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 SLC4A7Q9Y6M7 1214 aa14.1□□□□□ -0.15
PTPRF-202ENST00000372405 MYO7AQ13402 2215 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 MTCL1Q9Y4B5 1905 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 NRG2O14511 850 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 MATN3O15232 486 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CACNG3O60359 315 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ACSL4O60488 711 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 SUN1O94901 812 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CXCL14O95715 111 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 AP2A1O95782 977 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 MLNP12872 115 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ATP2A2P16615 1042 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 EPHB3P54753 998 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CRADDP78560 199 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CREMQ03060 361 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 TAF12Q16514 161 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 C5orf22Q49AR2 442 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 UNC5AQ6ZN44 842 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 PRPF39Q86UA1 669 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ARFGAP2Q8N6H7 521 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 MRRFQ96E11 262 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 OXNAD1Q96HP4 312 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ZFRQ96KR1 1074 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CYP2S1Q96SQ9 504 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 EBNA1BP2Q99848 306 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 KLF16Q9BXK1 252 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 STK39Q9UEW8 545 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 IPO11Q9UI26 975 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 RANBP2P49792 3224 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ARHGAP42A6NI28 874 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 HIDE1A8MVS5 230 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 RASA4BC9J798 803 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 RASA4O43374 803 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 TLL1O43897 1013 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 USP12O75317 370 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ARHGEF15O94989 841 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CSPG5O95196 566 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 MDH1P40925 334 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 NDST2P52849 883 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 GEMIN4P57678 1058 aaKnown RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 GNGT1P63211 74 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 TMED2Q15363 201 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 KBTBD12Q3ZCT8 623 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 TMC7Q7Z402 723 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 DENND1CQ8IV53 801 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 KLHDC8BQ8IXV7 354 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 LGI2Q8N0V4 545 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CFAP52Q8N1V2 620 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 ARNTL2Q8WYA1 636 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 KLHL5Q96PQ7 755 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 STMN4Q9H169 189 aaPredicted RBP14.09□□□□□ -0.15
PTPRF-202ENST00000372405 FETUBQ9UGM5 382 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 SLC24A2Q9UI40 661 aa14.09□□□□□ -0.15
PTPRF-202ENST00000372405 CDH23Q9H251 3354 aa14.08□□□□□ -0.15
PTPRF-202ENST00000372405 J3KR12 359 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 CPP00450 1065 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 HLA-DQB2P05538 268 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 MGAT1P26572 445 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 CORO1AP31146 461 aaKnown RBP14.08□□□□□ -0.16
PTPRF-202ENST00000372405 BMPR1AP36894 532 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 SESN2P58004 480 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-202ENST00000372405 ZXDBP98169 803 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 RASA2Q15283 850 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 ACBD5Q5T8D3 534 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-202ENST00000372405 ITPRIPL1Q6GPH6 555 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 RIBC1Q8N443 379 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-202ENST00000372405 OR52K1Q8NGK4 314 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 SPATA22Q8NHS9 363 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 DCAKDQ8WVC6 231 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 PLD4Q96BZ4 506 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 PRICKLE1Q96MT3 831 aaPredicted RBP14.08□□□□□ -0.16
PTPRF-202ENST00000372405 PAFAH2Q99487 392 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 TCF25Q9BQ70 676 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 LRRC3Q9BY71 257 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 UBP1Q9NZI7 540 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 SSX2IPQ9Y2D8 614 aa14.08□□□□□ -0.16
PTPRF-202ENST00000372405 GBF1Q92538 1859 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 H3BNC9 293 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 SPAG6O75602 509 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 CTNNB1P35222 781 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 PPP3CCP48454 512 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 HARS2P49590 506 aaKnown RBP14.07□□□□□ -0.16
PTPRF-202ENST00000372405 SGSHP51688 502 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 SARNPP82979 210 aaKnown RBP14.07□□□□□ -0.16
PTPRF-202ENST00000372405 TXNDC8Q6A555 127 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 TRMT10BQ6PF06 316 aaKnown RBP14.07□□□□□ -0.16
PTPRF-202ENST00000372405 ADGRD1Q6QNK2 874 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 GAREM2Q75VX8 874 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 TMC8Q8IU68 726 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 LRRC49Q8IUZ0 686 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.07□□□□□ -0.16
PTPRF-202ENST00000372405 OR52K2Q8NGK3 314 aa14.07□□□□□ -0.16
PTPRF-202ENST00000372405 PHOSPHO2Q8TCD6 241 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms