RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VPS28Q9UK41 221 aa18.89■□□□□ 0.61
CLN3-202ENST00000355477 SLCO1B1Q9Y6L6 691 aa18.89■□□□□ 0.61
CLN3-202ENST00000355477 CABIN1Q9Y6J0 2220 aa18.89■□□□□ 0.61
CLN3-202ENST00000355477 CEP295Q9C0D2 2601 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 TMEM131Q92545 1883 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 TCRBV5S1A1TA0A578 114 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 ARHGAP33O14559 1287 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 RNASEH1O60930 286 aaKnown RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 SEMA4FO95754 770 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 SDC4P31431 198 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 NNMTP40261 264 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 PTPN9P43378 593 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 NR1I3Q14994 352 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 CST6Q15828 149 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 TTC31Q49AM3 519 aaPredicted RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 FILIP1LQ4L180 1135 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 DAB2IPQ5VWQ8 1189 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 WDR59Q6PJI9 974 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 RABEPKQ7Z6M1 372 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 TFAP2DQ7Z6R9 452 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 ZCCHC9Q8N567 271 aaKnown RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 OR2I1PQ8NGU4 316 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 C1orf216Q8TAB5 229 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 CENPIQ92674 756 aaPredicted RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 PSMB7Q99436 277 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 GTPBP2Q9BX10 602 aaKnown RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 BTBD1Q9H0C5 482 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 MUC3BQ9H195 1237 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 CBX8Q9HC52 389 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 FBXL12Q9NXK8 326 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 ZNF212Q9UDV6 495 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 EIF2B4Q9UI10 523 aaKnown RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 MYO6Q9UM54 1294 aa18.88■□□□□ 0.61
CLN3-202ENST00000355477 TP53BP1Q12888 1972 aaPredicted RBP18.88■□□□□ 0.61
CLN3-202ENST00000355477 A0A0D9SEW6 157 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 A0A1W2PQC6 194 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 LRRC53A6NM62 1247 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SIGLEC16A6NMB1 481 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 ATP9BO43861 1147 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 KCNK5O95279 499 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 MT-CO1P00395 513 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 CALB1P05937 261 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 RHOCP08134 193 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 GNSP15586 552 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SLC8A1P32418 973 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 ADRA1BP35368 520 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 VASPP50552 380 aaPredicted RBP18.87■□□□□ 0.61
CLN3-202ENST00000355477 HDAC4P56524 1084 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 C1QBPQ07021 282 aaKnown RBP18.87■□□□□ 0.61
CLN3-202ENST00000355477 DLG2Q15700 870 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 ACBD5Q5T8D3 534 aaPredicted RBP18.87■□□□□ 0.61
CLN3-202ENST00000355477 ACAD10Q6JQN1 1059 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 USP30Q70CQ3 517 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 LUZP1Q86V48 1076 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 C3orf20Q8ND61 904 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 GANCQ8TET4 914 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SELENOOQ9BVL4 669 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 PCED1AQ9H1Q7 454 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 NEUROG2Q9H2A3 272 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SGK2Q9HBY8 427 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 TAS2R14Q9NYV8 317 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SUSD2Q9UGT4 822 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 SCML1Q9UN30 329 aa18.87■□□□□ 0.61
CLN3-202ENST00000355477 ACACBO00763 2458 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 A0A1B0GTW7 788 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 A0A1W2PP55 124 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 GIPC1O14908 333 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 SNAP91O60641 907 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 ADRB1P08588 477 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 CCDC172P0C7W6 258 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 OR1E1P30953 314 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 PSMD8P48556 350 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 ACCSLQ4AC99 568 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 E4F1Q66K89 784 aaPredicted RBP18.86■□□□□ 0.61
CLN3-202ENST00000355477 PSAPL1Q6NUJ1 521 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 STRADAQ7RTN6 431 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 SETD3Q86TU7 594 aaPredicted RBP18.86■□□□□ 0.61
CLN3-202ENST00000355477 MCOLN2Q8IZK6 566 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 SH2D3CQ8N5H7 860 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 AADATQ8N5Z0 425 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 CCDC185Q8N715 623 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 FAM172AQ8WUF8 416 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 BIRC7Q96CA5 298 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 OR12D3Q9UGF7 316 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 SLC25A13Q9UJS0 675 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 NCKAP1Q9Y2A7 1128 aa18.86■□□□□ 0.61
CLN3-202ENST00000355477 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.86■□□□□ 0.61
CLN3-202ENST00000355477 FAM72CH0Y354 149 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 K7ERQ8 282 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 BCAT2O15382 392 aaPredicted RBP18.85■□□□□ 0.61
CLN3-202ENST00000355477 SERPINC1P01008 464 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 TNFAIP3P21580 790 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 GPD1P21695 349 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 GLDCP23378 1020 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 METAP1P53582 386 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 ATXN3P54252 364 aaPredicted RBP18.85■□□□□ 0.61
CLN3-202ENST00000355477 GALCP54803 685 aa18.85■□□□□ 0.61
CLN3-202ENST00000355477 RPL7AP62424 266 aaKnown RBP18.85■□□□□ 0.61
CLN3-202ENST00000355477 ELAVL3Q14576 367 aaKnown RBP18.85■□□□□ 0.61
CLN3-202ENST00000355477 PPP1R15BQ5SWA1 713 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms