RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 HMBOX1Q6NT76 420 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 MACC1Q6ZN28 852 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 DENND6BQ8NEG7 585 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 HTRA1Q92743 480 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 ACSBG1Q96GR2 724 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 PHF12Q96QT6 1004 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 STX16-NPEPL1H3BU86 382 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 STX16O14662 325 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 GPD1P21695 349 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 PLA2G4FQ68DD2 849 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 HIPK1Q86Z02 1210 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 DAGLBQ8NCG7 672 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 DMRT2Q9Y5R5 561 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 EEF2KO00418 725 aaKnown RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TPTEP56180 551 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF181Q2M3W8 571 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TTI2Q6NXR4 508 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM53Q6P2H8 277 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 OR56A4Q8NGH8 313 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 EDC3Q96F86 508 aaKnown RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CCDC115Q96NT0 180 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF701M0R085 212 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 GEMP55040 296 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 GARNL3Q5VVW2 1013 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 CNTD1Q8N815 330 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 FIG4Q92562 907 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 S100PBPQ96BU1 408 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 AGO2Q9UKV8 859 aaKnown RBP12.8□□□□□ -0.36
COL6A3-203ENST00000353578 MADDQ8WXG6 1647 aa12.8□□□□□ -0.36
COL6A3-203ENST00000353578 MGAT4DA6NG13 374 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 DGAT1O75907 488 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 GALNTL6Q49A17 601 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 RBM48Q5RL73 367 aaKnown RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 FAM131AQ6UXB0 335 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SLC25A41Q8N5S1 370 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 FAM13CQ8NE31 585 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 DFFAO00273 331 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SNX4O95219 450 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ANO7Q6IWH7 933 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 MYO1HQ8N1T3 1032 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ROPN1LQ96C74 230 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 UQCC2Q9BRT2 126 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CUEDC1Q9NWM3 386 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 HPSEQ9Y251 543 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 DENND3A2RUS2 1198 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 GSC2O15499 205 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CYP26A1O43174 497 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 PSEN1P49768 467 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 OCLNQ16625 522 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 FAM47BQ8NA70 645 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 IQGAP1P46940 1657 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 NPHP3-ACAD11A0A0J9YXS1 232 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 C7P10643 843 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 IL32P24001 234 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 PTPN7P35236 360 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 STRBPQ96SI9 672 aaKnown RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 BCL7BQ9BQE9 202 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SAMD4AQ9UPU9 718 aaKnown RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 MED24O75448 989 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SUPT7LO94864 414 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 XRRA1Q6P2D8 792 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 C7orf26Q96N11 449 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 VAT1Q99536 393 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 TLR10Q9BXR5 811 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 QPCTLQ9NXS2 382 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ERVK-11Q9UQG0 969 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CLCA1A8K7I4 914 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 H3BN98 237 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 PEX3P56589 373 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 OR2B6P58173 313 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 HERVK_113P62684 666 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 FAM189A2Q15884 450 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 PDXDC2PQ6P474 469 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ARMC8Q8IUR7 673 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 BSNDQ8WZ55 320 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CLPTM1LQ96KA5 538 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 DHX15O43143 795 aaKnown RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 GJB6O95452 261 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 F9P00740 461 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ALAS1P13196 640 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CENPNQ96H22 339 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-203ENST00000353578 XPR1Q9UBH6 696 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 TJP2Q9UDY2 1190 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 LIMD1Q9UGP4 676 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 CLTCL1P53675 1640 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 MAPK12P53778 367 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ECT2LQ008S8 904 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SLC9A7Q96T83 725 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 LXNQ9BS40 222 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 SEMA4AQ9H3S1 761 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 ANKRA2Q9H9E1 313 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 MTMR10Q9NXD2 777 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 VANGL2Q9ULK5 521 aa12.79□□□□□ -0.36
COL6A3-203ENST00000353578 DFNA5O60443 496 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 POU1F1P28069 291 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 EMC2Q15006 297 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 PLEKHG4Q58EX7 1191 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 SCARA5Q6ZMJ2 495 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CHCHD4Q8N4Q1 142 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms