RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DENND1AQ8TEH3 1009 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 RMDN2Q96LZ7 410 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 LGMNQ99538 433 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SIK2Q9H0K1 926 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 CRISPLD1Q9H336 500 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 PRDM12Q9H4Q4 367 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TLE6Q9H808 572 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 IL23AQ9NPF7 189 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 ZFATQ9P243 1243 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 A0A0A0MRY4 1105 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TCRBV7S3A2A0A539 114 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SLC38A8A6NNN8 435 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 MSI1O43347 362 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 EDF1O60869 148 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 TMEM63AO94886 807 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 ACADSP16219 412 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TSHRP16473 764 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 PHBP35232 272 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 FDFT1P37268 417 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 NRG1Q02297 640 aaPredicted RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 DSG1Q02413 1049 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 FNBP1LQ5T0N5 605 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 HHATQ5VTY9 493 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 DDX53Q86TM3 631 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 CCDC33Q8N5R6 958 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 COLGALT1Q8NBJ5 622 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 PYROXD1Q8WU10 500 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 LRRN4Q8WUT4 740 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 P2RY11Q96G91 374 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 C1orf74Q96LT6 269 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SPATA13Q96N96 652 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 HERC2P3Q9BVR0 1158 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TTLL2Q9BWV7 592 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 UBE2OQ9C0C9 1292 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 MYLK2Q9H1R3 596 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 VCXQ9H320 206 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 TRABDQ9H4I3 376 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-201ENST00000345005 STOML1Q9UBI4 398 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 AFF4Q9UHB7 1163 aaKnown RBP13.13□□□□□ -0.31
CLK3-201ENST00000345005 NUDT5Q9UKK9 219 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 SNX10Q9Y5X0 201 aa13.13□□□□□ -0.31
CLK3-201ENST00000345005 C2CD2LO14523 706 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 FGF10O15520 208 aaPredicted RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 ADAM12O43184 909 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 MTSS1O43312 755 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 AHCYL1O43865 530 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 OPHN1O60890 802 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 SRGAP2BP0DMP2 458 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 ACRP10323 421 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 VAV1P15498 845 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 CREB1P16220 341 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 RPL17P18621 184 aaKnown RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 ATP6V1C1P21283 382 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 TBX4P57082 545 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 COG7P83436 770 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 TMED2Q15363 201 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 CGB2Q6NT52 195 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 ZNF276Q8N554 614 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 MCUQ8NE86 351 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 ZNF461Q8TAF7 563 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 SLC39A13Q96H72 371 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 FCRL2Q96LA5 508 aaPredicted RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 CDK5RAP1Q96SZ6 601 aaKnown RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 CLSTN3Q9BQT9 956 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 CATSPERBQ9H7T0 1116 aa13.12□□□□□ -0.31
CLK3-201ENST00000345005 CPSF2Q9P2I0 782 aaKnown RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 ZMYND8Q9ULU4 1186 aaPredicted RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 MRPL42Q9Y6G3 142 aaKnown RBP13.12□□□□□ -0.31
CLK3-201ENST00000345005 RNF103O00237 685 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 TM9SF1O15321 606 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ABLIM3O94929 683 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 SNUPNO95149 360 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 ZDHHC11BP0C7U3 371 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 TPSB2P20231 275 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 HOXC13P31276 330 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 FOXN2P32314 431 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 KPNA1P52294 538 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 MLLT6P55198 1093 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 WDR4P57081 412 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 CDK16Q00536 496 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 GAD2Q05329 585 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 EFEMP1Q12805 493 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 MTA1Q13330 715 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 TRIP4Q15650 581 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 TPSAB1Q15661 275 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 SEPT7Q16181 437 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 C10orf120Q5SQS8 335 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ACBD5Q5T8D3 534 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 RASIP1Q5U651 963 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 RWDD4Q6NW29 188 aaKnown RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 TMCO2Q7Z6W1 182 aaPredicted RBP13.11□□□□□ -0.31
CLK3-201ENST00000345005 CYP4X1Q8N118 509 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 LZTR1Q8N653 840 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ATP6V0D2Q8N8Y2 350 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 GIPC2Q8TF65 315 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 OVCA2Q8WZ82 227 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 ERP27Q96DN0 273 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 NUDCD1Q96RS6 583 aa13.11□□□□□ -0.31
CLK3-201ENST00000345005 YME1L1Q96TA2 773 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms