RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CITED4Q96RK1 184 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 UBE2OQ9C0C9 1292 aaKnown RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 NUAK2Q9H093 628 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 ZNHIT2Q9UHR6 403 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 CORO1CQ9ULV4 474 aaPredicted RBP8.84□□□□□ -0.99
RTN3-202ENST00000339997 DUSP12Q9UNI6 340 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 REREQ9P2R6 1566 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 LAMA3Q16787 3333 aa8.84□□□□□ -0.99
RTN3-202ENST00000339997 SLC12A8A0AV02 714 aa8.83□□□□□ -1
RTN3-202ENST00000339997 PAPSS1O43252 624 aaPredicted RBP8.83□□□□□ -1
RTN3-202ENST00000339997 EDF1O60869 148 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 KLHL18O94889 574 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CD4P01730 458 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CCDC166P0CW27 439 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SHMT1P34896 483 aa8.83□□□□□ -1
RTN3-202ENST00000339997 RPL5P46777 297 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 GRIA4P48058 902 aa8.83□□□□□ -1
RTN3-202ENST00000339997 NAA20P61599 178 aa8.83□□□□□ -1
RTN3-202ENST00000339997 LAMTOR4Q0VGL1 99 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ADRM1Q16186 407 aa8.83□□□□□ -1
RTN3-202ENST00000339997 PDZK1Q5T2W1 519 aa8.83□□□□□ -1
RTN3-202ENST00000339997 C11orf88Q6PI97 169 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SH3BP5LQ7L8J4 393 aa8.83□□□□□ -1
RTN3-202ENST00000339997 UBE2J2Q8N2K1 259 aa8.83□□□□□ -1
RTN3-202ENST00000339997 NAT16Q8N8M0 369 aa8.83□□□□□ -1
RTN3-202ENST00000339997 AKT1S1Q96B36 256 aa8.83□□□□□ -1
RTN3-202ENST00000339997 MED8Q96G25 268 aa8.83□□□□□ -1
RTN3-202ENST00000339997 NAT9Q9BTE0 207 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ZNRF3Q9ULT6 936 aa8.83□□□□□ -1
RTN3-202ENST00000339997 NR2E3Q9Y5X4 410 aa8.83□□□□□ -1
RTN3-202ENST00000339997 RAD54BQ9Y620 910 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ASTN1O14525 1302 aa8.83□□□□□ -1
RTN3-202ENST00000339997 GLI3P10071 1580 aa8.83□□□□□ -1
RTN3-202ENST00000339997 MYO9BQ13459 2157 aa8.83□□□□□ -1
RTN3-202ENST00000339997 LIASO43766 372 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TPBGLP0DKB5 382 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TNFSF9P41273 254 aa8.83□□□□□ -1
RTN3-202ENST00000339997 RPL14P50914 215 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 GEMP55040 296 aa8.83□□□□□ -1
RTN3-202ENST00000339997 MAXP61244 160 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CCNIQ14094 377 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SV2CQ496J9 727 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TMEM119Q4V9L6 283 aa8.83□□□□□ -1
RTN3-202ENST00000339997 INTS5Q6P9B9 1019 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 TRABD2AQ86V40 505 aa8.83□□□□□ -1
RTN3-202ENST00000339997 HPS1Q92902 700 aa8.83□□□□□ -1
RTN3-202ENST00000339997 PCDHB18PQ96TA0 734 aa8.83□□□□□ -1
RTN3-202ENST00000339997 PHACTR1Q9C0D0 580 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ETNK2Q9NVF9 386 aa8.83□□□□□ -1
RTN3-202ENST00000339997 KCNK4Q9NYG8 393 aa8.83□□□□□ -1
RTN3-202ENST00000339997 EHD3Q9NZN3 535 aa8.83□□□□□ -1
RTN3-202ENST00000339997 AAR2Q9Y312 384 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 PDZK1P1A8MUH7 402 aa8.83□□□□□ -1
RTN3-202ENST00000339997 KPNA4O00629 521 aaPredicted RBP8.83□□□□□ -1
RTN3-202ENST00000339997 LSM1O15116 133 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 STAU1O95793 577 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 CYP2C8P10632 490 aa8.83□□□□□ -1
RTN3-202ENST00000339997 YBX3P16989 372 aaKnown RBP eCLIP8.83□□□□□ -12e-9■□□□□ 10.1
RTN3-202ENST00000339997 HARS2P49590 506 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 CASP7P55210 303 aa8.83□□□□□ -1
RTN3-202ENST00000339997 PSME3P61289 254 aa8.83□□□□□ -1
RTN3-202ENST00000339997 NOTUMQ6P988 496 aa8.83□□□□□ -1
RTN3-202ENST00000339997 IL27RAQ6UWB1 636 aa8.83□□□□□ -1
RTN3-202ENST00000339997 GCNT7Q6ZNI0 430 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CD302Q8IX05 232 aa8.83□□□□□ -1
RTN3-202ENST00000339997 EXOC2Q96KP1 924 aa8.83□□□□□ -1
RTN3-202ENST00000339997 MTMR9Q96QG7 549 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CLPBQ9H078 707 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SYNDIG1Q9H7V2 258 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TMCC3Q9ULS5 477 aa8.83□□□□□ -1
RTN3-202ENST00000339997 C15orf38-AP3S2A0A0A6YYH1 394 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TOR1BO14657 336 aa8.83□□□□□ -1
RTN3-202ENST00000339997 MED26O95402 600 aa8.83□□□□□ -1
RTN3-202ENST00000339997 CHRM5P08912 532 aaPredicted RBP8.83□□□□□ -1
RTN3-202ENST00000339997 RBP1P09455 135 aa8.83□□□□□ -1
RTN3-202ENST00000339997 USP17L7P0C7H9 530 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SUPT20HL2P0C7V6 817 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ALDH4A1P30038 563 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SKIV2L2P42285 1042 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 NAMPTP43490 491 aa8.83□□□□□ -1
RTN3-202ENST00000339997 RGS21Q2M5E4 152 aa8.83□□□□□ -1
RTN3-202ENST00000339997 RALGPS1Q5JS13 557 aa8.83□□□□□ -1
RTN3-202ENST00000339997 TMEM26Q6ZUK4 368 aa8.83□□□□□ -1
RTN3-202ENST00000339997 ARPINQ7Z6K5 226 aa8.83□□□□□ -1
RTN3-202ENST00000339997 KRT77Q7Z794 578 aa8.83□□□□□ -1
RTN3-202ENST00000339997 SLITRK1Q96PX8 696 aa8.83□□□□□ -1
RTN3-202ENST00000339997 AGO4Q9HCK5 861 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 TRNAU1APQ9NX07 287 aaKnown RBP8.83□□□□□ -1
RTN3-202ENST00000339997 APOC4-APOC2K7ER74 178 aa8.82□□□□□ -1
RTN3-202ENST00000339997 RAD51BO15315 384 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PSMD3O43242 534 aa8.82□□□□□ -1
RTN3-202ENST00000339997 MTSS1O43312 755 aa8.82□□□□□ -1
RTN3-202ENST00000339997 ENTPD3O75355 529 aa8.82□□□□□ -1
RTN3-202ENST00000339997 APOC2P02655 101 aa8.82□□□□□ -1
RTN3-202ENST00000339997 CAP2P40123 477 aa8.82□□□□□ -1
RTN3-202ENST00000339997 PIK3CGP48736 1102 aa8.82□□□□□ -1
RTN3-202ENST00000339997 SERPINH1P50454 418 aaKnown RBP8.82□□□□□ -1
RTN3-202ENST00000339997 CCNG1P51959 295 aa8.82□□□□□ -1
RTN3-202ENST00000339997 SLC7A2P52569 658 aa8.82□□□□□ -1
RTN3-202ENST00000339997 USP46P62068 366 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms