RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TTC7BQ86TV6 843 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DQX1Q8TE96 717 aaKnown RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 SH3RF2Q8TEC5 729 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 C8orf48Q96LL4 319 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 RNF157Q96PX1 679 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 CDHR5Q9HBB8 845 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 L3MBTL1Q9Y468 752 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 ZWINTO95229 277 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 EPHX1P07099 455 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 FBXW4P57775 412 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 POU6F1Q14863 301 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 PDPK2PQ6A1A2 396 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 SLC26A9Q7LBE3 791 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 SERAC1Q96JX3 654 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 GNGT2O14610 69 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 MDM4O15151 490 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DCTN3O75935 186 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 MAGOHP61326 146 aaKnown RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 GPR17Q13304 367 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TAF11Q15544 211 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 FAM124AQ86V42 546 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 MRPL40Q9NQ50 206 aaKnown RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 RIC8BQ9NVN3 520 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DOCK2Q92608 1830 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3DA0A087WVF3 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3IA0A087WXS9 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3EA0A087X179 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3KA0A087X1G2 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 A0A0A0MRY4 1105 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3FA6NER0 549 aaPredicted RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3LB9A6J9 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 C1RP00736 705 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3HP0C7X1 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 EN2P19622 333 aaPredicted RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 MAGEA11P43364 429 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 PPP2R2AP63151 447 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 NAB1Q13506 487 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3GQ6DHY5 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3CQ6IPX1 549 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TBC1D3Q8IZP1 549 aaPredicted RBP10.35□□□□□ -0.75
USP54-201ENST00000339859 GIMAP7Q8NHV1 300 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 SPATA13Q96N96 652 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DCDC2Q9UHG0 476 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 GPSM3Q9Y4H4 160 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 TAF1P21675 1872 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 KPNA5O15131 536 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 KITP10721 976 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 ADH5P11766 374 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 GOT1P17174 413 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DAOAP59103 153 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 INSCQ1MX18 579 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 REXO1L1PQ8IX06 675 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 MYO19Q96H55 970 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 CEP41Q9BYV8 373 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 DUSP10Q9Y6W6 482 aa10.35□□□□□ -0.75
USP54-201ENST00000339859 VNN1O95497 513 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 BMP6P22004 513 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 XRCC4Q13426 336 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 EOGTQ5NDL2 527 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 MFSD4BQ5TF39 518 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 PAPD7Q5XG87 772 aaKnown RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 ZNF461Q8TAF7 563 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 HEXDCQ8WVB3 486 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ZCWPW1Q9H0M4 648 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ACP6Q9NPH0 428 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 UPP1Q16831 310 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 PTPN20Q4JDL3 420 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ZCWPW2Q504Y3 356 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 IRAK1BP1Q5VVH5 260 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 AFTPHQ6ULP2 937 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 CFAP52Q8N1V2 620 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 BAP1Q92560 729 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 TM6SF2Q9BZW4 377 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 COG4Q9H9E3 785 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 CATSPERZQ9NTU4 200 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 CTNNAL1Q9UBT7 734 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 GNPTGQ9UJJ9 305 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 PHIPQ8WWQ0 1821 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 HOXB8P17481 243 aaPredicted RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 PTPN9P43378 593 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 MGAT5Q09328 741 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 TSNAXIP1Q2TAA8 658 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 TSTD1Q8NFU3 115 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 KAT2BQ92831 832 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 RSRC1Q96IZ7 334 aaKnown RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 SHOC2Q9UQ13 582 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 TLR6Q9Y2C9 796 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ORC6Q9Y5N6 252 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 KCNU1A8MYU2 1149 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 STAU1O95793 577 aaKnown RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 ELFN1P0C7U0 828 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ABCE1P61221 599 aaKnown RBP10.34□□□□□ -0.75
USP54-201ENST00000339859 EFTUD2Q15029 972 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-201ENST00000339859 ANKRD20A2Q5SQ80 823 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 GRTP1Q5TC63 336 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ANKRD20A1Q5TYW2 823 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 DNAAF5Q86Y56 855 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 NCLNQ969V3 563 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 ARHGEF4Q9NR80 690 aa10.34□□□□□ -0.75
USP54-201ENST00000339859 TXLNGQ9NUQ3 528 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms