RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 FAM107AO95990 144 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 ATP5C1P36542 298 aaKnown RBP22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 PLD1Q13393 1074 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 AFMIDQ63HM1 303 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 KCTD11Q693B1 232 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 CHSY1Q86X52 802 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 DNAAF3Q8N9W5 541 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 HERC2P3Q9BVR0 1158 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 IL1RAPL1Q9NZN1 696 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 RHOQP17081 205 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 ALDH1A3P47895 512 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 SF3A3Q12874 501 aaKnown RBP eCLIP22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 TAF12Q16514 161 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 LRRC6Q86X45 466 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 DNMT3LQ9UJW3 386 aa22.92■■□□□ 1.26
PDLIM2-203ENST00000339162 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 FAM47DPA6NHR8 397 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 PRRG1O14668 218 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 MATN3O15232 486 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 CSPG5O95196 566 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 MT-CYBP00156 380 aaPredicted RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 CSH1P0DML2 217 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 CSH2P0DML3 217 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 PRKCHP24723 683 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 RFWD3Q6PCD5 774 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 DDX53Q86TM3 631 aaKnown RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 CFAP52Q8N1V2 620 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 HMCESQ96FZ2 354 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 PAIP2Q9BPZ3 127 aaKnown RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 NKIRAS1Q9NYS0 192 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 SLC17A6Q9P2U8 582 aa22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 IPO11Q9UI26 975 aaKnown RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 NYNRINQ9P2P1 1898 aaKnown RBP22.91■■□□□ 1.26
PDLIM2-203ENST00000339162 WASH4PA8MWX3 477 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 TRDMT1O14717 391 aaKnown RBP22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 COCHO43405 550 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 RPA3P35244 121 aaPredicted RBP22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 TWF1Q12792 350 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 TPGS2Q68CL5 300 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 ZNF354CQ86Y25 554 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 CHMP6Q96FZ7 201 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 ZNF317Q96PQ6 595 aaPredicted RBP22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 TMEM106CQ9BVX2 250 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 GKN1Q9NS71 199 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 IGLV3-10A0A075B6K4 115 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 J3KR12 359 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 ZNF189O75820 626 aaPredicted RBP22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 TPH1P17752 444 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 RING1Q06587 406 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 ZNF33AQ06730 810 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 SLC26A11Q86WA9 606 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 RBM22Q9NW64 420 aaKnown RBP eCLIP22.9■■□□□ 1.264e-6■■■■□ 24.3
PDLIM2-203ENST00000339162 TMEM248Q9NWD8 314 aa22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 PPARGC1AQ9UBK2 798 aaKnown RBP22.9■■□□□ 1.26
PDLIM2-203ENST00000339162 C2orf78A6NCI8 922 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 SUN1O94901 812 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 HLA-DQB2P05538 268 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 CA4P22748 312 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 HECTD3Q5T447 861 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 CERCAMQ5T4B2 595 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 UMODL1-AS1Q8N2C9 162 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 IL12RB2Q99665 862 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 RNF38Q9H0F5 515 aa22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 C12orf65Q9H3J6 166 aaKnown RBP22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 MRPL17Q9NRX2 175 aaKnown RBP22.89■■□□□ 1.26
PDLIM2-203ENST00000339162 SRRM3A6NNA2 597 aaPredicted RBP22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 TEX28O15482 410 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 ATP9BO43861 1147 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 EFCAB14O75071 495 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 WDR4P57081 412 aaKnown RBP22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 RAB33AQ14088 237 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 NUGGCQ68CJ6 796 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 CPLX4Q7Z7G2 160 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 LRRC34Q8IZ02 419 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 SERAC1Q96JX3 654 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 IL23AQ9NPF7 189 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 MOCS1Q9NZB8 636 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 TRPM5Q9NZQ8 1165 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 SENP1Q9P0U3 644 aa22.89■■□□□ 1.25
PDLIM2-203ENST00000339162 IQANK1A0A1B0GTG1 560 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 VIMP08670 466 aaKnown RBP22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 TACR2P21452 398 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 SLC6A4P31645 630 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 ELF1P32519 619 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 BMPR2Q13873 1038 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 CRYMQ14894 314 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 LGI2Q8N0V4 545 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 PDZD8Q8NEN9 1154 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 KLHL5Q96PQ7 755 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 CASS4Q9NQ75 786 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 TMEM51Q9NW97 253 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 DOCK4Q8N1I0 1966 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 FAM159BA6NKW6 160 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 TYROBPO43914 113 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 GSTA2P09210 222 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 IRF1P10914 325 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 PGAM1P18669 254 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 DRD4P21917 467 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 PRPSAP1Q14558 356 aa22.88■■□□□ 1.25
PDLIM2-203ENST00000339162 KDELC2Q7Z4H8 507 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms