RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 DEUP1Q05D60 604 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 SCAPQ12770 1279 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 NR1H3Q13133 447 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 CALCOCO2Q13137 446 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 MTA1Q13330 715 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 DPYSL3Q14195 570 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 TRIP4Q15650 581 aaPredicted RBP16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 SMTNL2Q2TAL5 461 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 KCNT1Q5JUK3 1230 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 ACBD5Q5T8D3 534 aaPredicted RBP16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 MSANTD2Q6P1R3 559 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 TTC27Q6P3X3 843 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 RFX6Q8HWS3 928 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 ETFBKMTQ8IXQ9 262 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 PHTF2Q8N3S3 785 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 C1orf54Q8WWF1 131 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 PEBP4Q96S96 227 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 SNRNP25Q9BV90 132 aaKnown RBP16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 CALN1Q9BXU9 219 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 FOXP3Q9BZS1 431 aa16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 MTRF1LQ9UGC7 380 aaKnown RBP16.91■□□□□ 0.3
PDLIM1-201ENST00000329399 SDK1Q7Z5N4 2213 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 M0QYT0 321 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 SMAPO00193 183 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 TDGF1P13385 188 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 NCAM1P13591 858 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 STIP1P31948 543 aaKnown RBP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 HTR7P34969 479 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ARL4AP40617 200 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 HCAR3P49019 387 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 CSTF1Q05048 431 aaKnown RBP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 DMWDQ09019 674 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 GRSF1Q12849 480 aaKnown RBP eCLIP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 HLTFQ14527 1009 aaKnown RBP eCLIP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 CASP8Q14790 479 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ANO4Q32M45 955 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 EMC10Q5UCC4 262 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ALS2CLQ60I27 953 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 KAZNQ674X7 775 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 C4orf22Q6V702 233 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 TADA2BQ86TJ2 420 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 SLC35B2Q8TB61 432 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 RNF139Q8WU17 664 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ATOH1Q92858 354 aaPredicted RBP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 HAUS1Q96CS2 278 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 CDK5RAP1Q96SZ6 601 aaKnown RBP16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ADAM33Q9BZ11 813 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 PCDH18Q9HCL0 1135 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 ZDHHC4Q9NPG8 344 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 HCN2Q9UL51 889 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 FZD10Q9ULW2 581 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 CLEC4EQ9ULY5 219 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 NFU1Q9UMS0 254 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 AP4E1Q9UPM8 1137 aa16.9■□□□□ 0.3
PDLIM1-201ENST00000329399 CFAP69A5D8W1 941 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 RNF40O75150 1001 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 KRT10P13645 584 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 L1CAMP32004 1257 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 ANKRD20A8PQ5CZ79 823 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 EFHC2Q5JST6 749 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 DGKKQ5KSL6 1271 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 SH3PXD2AQ5TCZ1 1133 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 SLC9A4Q6AI14 798 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 C1orf228Q6PIY5 440 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 DQX1Q8TE96 717 aaKnown RBP16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 P3H4Q92791 437 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 OTUB2Q96DC9 234 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 MYEOVQ96EZ4 313 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 PRRX2Q99811 253 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 OGFRQ9NZT2 677 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 ZNF148Q9UQR1 794 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 RAD54BQ9Y620 910 aa16.89■□□□□ 0.29
PDLIM1-201ENST00000329399 GOLGA6L7A0A1B0GV03 622 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 NEDD8-MDP1E9PL57 170 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 H3BRJ5 948 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 APOL1O14791 398 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 MCF2LO15068 1137 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 HOXC11O43248 304 aaPredicted RBP16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 DAPK3O43293 454 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 LAMTOR5O43504 91 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 TULP3O75386 442 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 ADH1CP00326 375 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 IGLV3-27P01718 113 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 SEC13P55735 322 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 KDSRQ06136 332 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 XRCC4Q13426 336 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 OASLQ15646 514 aaKnown RBP16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 BRMS1LQ5PSV4 323 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 GSTA5Q7RTV2 222 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 PCGF5Q86SE9 256 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 TAC4Q86UU9 113 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 ALLCQ8N6M5 410 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 SNF8Q96H20 258 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 CCDC114Q96M63 670 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 HERPUD2Q9BSE4 406 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 PRMT8Q9NR22 394 aaPredicted RBP16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 OLA1Q9NTK5 396 aaKnown RBP16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 KLHL11Q9NVR0 708 aa16.88■□□□□ 0.29
PDLIM1-201ENST00000329399 CALCOCO1Q9P1Z2 691 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms