RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 CCDC28BQ9BUN5 200 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 VPS33BQ9H267 617 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 L2HGDHQ9H9P8 463 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 AXIN2Q9Y2T1 843 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 CHD5Q8TDI0 1954 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 RARAP10276 462 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 IFI30P13284 250 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 CBWD3Q5JTY5 395 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 CBWD5Q5RIA9 395 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 XPNPEP3Q9NQH7 507 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 AP4E1Q9UPM8 1137 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 DOCK9Q9BZ29 2069 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 ZNF521Q96K83 1311 aa8.03□□□□□ -1.12
CIITA-201ENST00000324288 BCLAF3A2AJT9 711 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 RARGP13631 454 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 VAV1P15498 845 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 MSH3P20585 1137 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 KLRK1P26718 216 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 PPP2R1BP30154 601 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 RCVRNP35243 200 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 SKIV2L2P42285 1042 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 SFSWAPQ12872 951 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 CBX3Q13185 183 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 RFX4Q33E94 735 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 PPP1R26Q5T8A7 1209 aaPredicted RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 ATG9AQ7Z3C6 839 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 R3HCC1LQ7Z5L2 792 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 LRRC17Q8N6Y2 441 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 SETD9Q8NE22 299 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 PPP1R13LQ8WUF5 828 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 DPF3Q92784 378 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 SLC5A5Q92911 643 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 DPY30Q9C005 99 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.02□□□□□ -1.12
CIITA-201ENST00000324288 FAM172BPA6NC97 362 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 C2orf71A6NGG8 1288 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 ZSCAN5DPP0CG00 497 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 NR4A1P22736 598 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 ADSSP30520 456 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 DSG4Q86SJ6 1040 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 ALYREFQ86V81 257 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 FUKQ8N0W3 1084 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 AHCYL2Q96HN2 611 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 BBS4Q96RK4 519 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 ABCG8Q9H221 673 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 MTIF3Q9H2K0 278 aaKnown RBP8.02□□□□□ -1.12
CIITA-201ENST00000324288 ZNF304Q9HCX3 659 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 SLC12A4Q9UP95 1085 aa8.02□□□□□ -1.12
CIITA-201ENST00000324288 KDM6AO15550 1401 aaPredicted RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 ATP6V1G1O75348 118 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 ZFP69Q49AA0 526 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 ZNF470Q6ECI4 717 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CLEC17AQ6ZS10 378 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 NT5DC4Q86YG4 428 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 FBXW8Q8N3Y1 598 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SLC24A2Q9UI40 661 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 AK5Q9Y6K8 562 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CEP152O94986 1710 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 TBX3O15119 743 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CHRNGP07510 517 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 FMO4P31512 558 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 ANXA11P50995 505 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 ZNF846Q147U1 533 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MILR1Q7Z6M3 343 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 TMEM169Q96HH4 297 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 GFM1Q96RP9 751 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 APBA2Q99767 749 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 RNF19AQ9NV58 838 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 AAR2Q9Y312 384 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 BCORL1Q5H9F3 1711 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SIN3BO75182 1162 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 RHOCP08134 193 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CYP2F1P24903 491 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 FRG1Q14331 258 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 USF2Q15853 346 aaPredicted RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 ARMC8Q8IUR7 673 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 CYP4X1Q8N118 509 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 COLGALT1Q8NBJ5 622 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 IGDCC4Q8TDY8 1250 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 POMKQ9H5K3 350 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 USP20Q9Y2K6 914 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SERPINE1P05121 402 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 DRD4P21917 467 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PRKAA1Q13131 559 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PKN1Q16512 942 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 HPS6Q86YV9 775 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 COL26A1Q96A83 441 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MTMR8Q96EF0 704 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 APOPT1Q96IL0 206 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 ARHGAP28Q9P2N2 729 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 NUDT5Q9UKK9 219 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 SHOC2Q9UQ13 582 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 A0A1W2PQJ5 194 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PQBP1O60828 265 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 STAG3L1P0CL83 205 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 MSX2P35548 267 aaPredicted RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 SCRN3Q0VDG4 424 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 PEG10Q86TG7 708 aaKnown RBP8.02□□□□□ -1.13
CIITA-201ENST00000324288 SPATA6LQ8N4H0 392 aa8.02□□□□□ -1.13
CIITA-201ENST00000324288 UBA2Q9UBT2 640 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms