RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 SLC26A9Q7LBE3 791 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 TICAM1Q8IUC6 712 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 ZDHHC17Q8IUH5 632 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 MICALL2Q8IY33 904 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 TTC39CQ8N584 583 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 HSPBAP1Q96EW2 488 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 CNDP1Q96KN2 507 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 SERPINI1Q99574 410 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 FERMT1Q9BQL6 677 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 FDXACB1Q9BRP7 624 aaPredicted RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 GATA5Q9BWX5 397 aaPredicted RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 R3HDMLQ9H3Y0 253 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 Q9H521 79 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 COPS7BQ9H9Q2 264 aaPredicted RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 MATN2O00339 956 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 STRNO43815 780 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 ARF4P18085 180 aaPredicted RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 MPSTP25325 297 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 EPHA3P29320 983 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 SERPINB8P50452 374 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 PKNOX1P55347 436 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 ITGA7Q13683 1181 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 LSM12Q3MHD2 195 aaKnown RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 SPANXN3Q5MJ09 141 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 C16orf89Q6UX73 402 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 LBX2Q6XYB7 198 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 CLEC14AQ86T13 490 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 FAM131BQ86XD5 332 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 ZNF567Q8N184 647 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 GALNT4Q8N4A0 578 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 ADAM32Q8TC27 787 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 KBTBD7Q8WVZ9 684 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 SPATA33Q96N06 139 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 NFKBIZQ9BYH8 718 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 MRPS26Q9BYN8 205 aaKnown RBP13.72□□□□□ -0.21
SKA3-202ENST00000314759 CXCL16Q9H2A7 254 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 DMTF1Q9Y222 760 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 HES2Q9Y543 173 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 SNX9Q9Y5X1 595 aa13.72□□□□□ -0.21
SKA3-202ENST00000314759 HCRTO43612 131 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 TRPA1O75762 1119 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 HNRNPCP07910 306 aaKnown RBP eCLIP13.71□□□□□ -0.21
SKA3-202ENST00000314759 SPRP35270 261 aaPredicted RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 ARL4AP40617 200 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 PHKA2P46019 1235 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 CCR10P46092 362 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 IGBP1P78318 339 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 CEACAM7Q14002 265 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 PDK1Q15118 436 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 FAM187BQ17R55 369 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 BNC2Q6ZN30 1099 aaPredicted RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 AMIGO2Q86SJ2 522 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 RNF148Q8N7C7 305 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 C7orf31Q8N865 590 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 CCNYQ8ND76 341 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 ACVR1CQ8NER5 493 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 OR52K1Q8NGK4 314 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 MIPOL1Q8TD10 442 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 ILKAPQ9H0C8 392 aaPredicted RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 FAM124BQ9H5Z6 455 aaPredicted RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 NMRAL1Q9HBL8 299 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 TMPRSS4Q9NRS4 437 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 ADAM28Q9UKQ2 775 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 BLOC1S6Q9UL45 172 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 GNEQ9Y223 722 aaKnown RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 PCDHGA4Q9Y5G9 962 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 LOC285556D6RIA3 1793 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 PPEF2O14830 753 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 USP12O75317 370 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 C2P06681 752 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 LCP1P13796 627 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 SH3D19Q5HYK7 790 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 TREML2Q5T2D2 321 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 ZNF410Q86VK4 478 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 TP53INP2Q8IXH6 220 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 CNKSR2Q8WXI2 1034 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 COPS5Q92905 334 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 USP13Q92995 863 aaPredicted RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 RCN3Q96D15 328 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 DPEP3Q9H4B8 488 aa13.71□□□□□ -0.21
SKA3-202ENST00000314759 TDRKHQ9Y2W6 561 aaKnown RBP13.71□□□□□ -0.21
SKA3-202ENST00000314759 SCN1AP35498 2009 aa13.71□□□□□ -0.22
SKA3-202ENST00000314759 KPNA7A9QM74 516 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 CFLARO15519 480 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 TRMUO75648 421 aaKnown RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 C22orf31O95567 290 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 DPP6P42658 865 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 GLUD2P49448 558 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 DCTN2Q13561 401 aaKnown RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 KLHL35Q6PF15 583 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 TMEM126BQ8IUX1 230 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 AHI1Q8N157 1196 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 BHLHE22Q8NFJ8 381 aaPredicted RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 RP9Q8TA86 221 aaKnown RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 URGCPQ8TCY9 931 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 ZNF669Q96BR6 464 aaPredicted RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 AGAP3Q96P47 875 aa13.7□□□□□ -0.22
SKA3-202ENST00000314759 PDGFDQ9GZP0 370 aaPredicted RBP13.7□□□□□ -0.22
SKA3-202ENST00000314759 ZNF696Q9H7X3 374 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms