RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 PPARGC1AQ9UBK2 798 aaKnown RBP17■□□□□ 0.31
CCDC40-201ENST00000269318 VANGL2Q9ULK5 521 aa17■□□□□ 0.31
CCDC40-201ENST00000269318 MRPL42Q9Y6G3 142 aaKnown RBP17■□□□□ 0.31
CCDC40-201ENST00000269318 MATN3O15232 486 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 ITIH4Q14624 930 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 C10orf120Q5SQS8 335 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 LGSNQ5TDP6 509 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 MARK2Q7KZI7 788 aaKnown RBP16.99■□□□□ 0.31
CCDC40-201ENST00000269318 OTOP3Q7RTS5 596 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 MIB1Q86YT6 1006 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 APOPT1Q96IL0 206 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 BTN2A3PQ96KV6 586 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 CEP295NLQ96MC4 621 aa16.99■□□□□ 0.31
CCDC40-201ENST00000269318 NYNRINQ9P2P1 1898 aaKnown RBP16.99■□□□□ 0.31
CCDC40-201ENST00000269318 RFPL1O75677 317 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 PYGBP11216 843 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 RHOQP17081 205 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 RPL17P18621 184 aaKnown RBP16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ADRA1DP25100 572 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 RING1Q06587 406 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 CGB2Q6NT52 195 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 LRRC49Q8IUZ0 686 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 UMODL1-AS1Q8N2C9 162 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ZNF276Q8N554 614 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ATP6V0D2Q8N8Y2 350 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 USP33Q8TEY7 942 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 MTBPQ96DY7 904 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 UBE2OQ9C0C9 1292 aaKnown RBP16.98■□□□□ 0.31
CCDC40-201ENST00000269318 LRRC40Q9H9A6 602 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 SLC17A7Q9P2U7 560 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 LPXNO60711 386 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 KRT38O76015 456 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 OR1D2P34982 312 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 CCNFP41002 786 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ETV4P43268 484 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 SERPINB9P50453 376 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 PAPOLAP51003 745 aaKnown RBP16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ZKSCAN8Q15776 578 aaPredicted RBP16.98■□□□□ 0.31
CCDC40-201ENST00000269318 SPANXN3Q5MJ09 141 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 HHATQ5VTY9 493 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 TMEM135Q86UB9 458 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 FCRL3Q96P31 734 aaPredicted RBP16.98■□□□□ 0.31
CCDC40-201ENST00000269318 FCRL5Q96RD9 977 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ZYG11BQ9C0D3 744 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 CCSER2Q9H7U1 834 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 TMEM248Q9NWD8 314 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 BFARQ9NZS9 450 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 ATP11BQ9Y2G3 1177 aa16.98■□□□□ 0.31
CCDC40-201ENST00000269318 SLC12A8A0AV02 714 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 TLR5O60602 858 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 POLBP06746 335 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 DHRS4L1P0CG22 281 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 RFC2P35250 354 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 NDST2P52849 883 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 NAB1Q13506 487 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 BMPR2Q13873 1038 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 PRPSAP1Q14558 356 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ALFQ53S48 1182 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 TIGD7Q6NT04 549 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 FBXL22Q6P050 247 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ZNF449Q6P9G9 518 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 SPOCK2Q92563 424 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 TOP1MTQ969P6 601 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ZNF689Q96CS4 500 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 CLSTN3Q9BQT9 956 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 C12orf65Q9H3J6 166 aaKnown RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 RC3H2Q9HBD1 1191 aaKnown RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 GLOD4Q9HC38 313 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 TMEM39AQ9NV64 488 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 UBP1Q9NZI7 540 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ZNF212Q9UDV6 495 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 LTBP2Q14767 1821 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 GOLGA6L7A0A1B0GV03 622 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 PSMD3O43242 534 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 CNTN5O94779 1100 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 KIAA0754O94854 1291 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 PEX11BO96011 259 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 TUFMP49411 452 aaKnown RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 FRG1Q14331 258 aaKnown RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ANKS4BQ8N8V4 417 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 DNAAF3Q8N9W5 541 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 IGSF8Q969P0 613 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 ZNF333Q96JL9 665 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 MKS1Q9NXB0 559 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 SLC17A6Q9P2U8 582 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 USP15Q9Y4E8 981 aaPredicted RBP16.97■□□□□ 0.31
CCDC40-201ENST00000269318 RPS6KL1Q9Y6S9 549 aa16.97■□□□□ 0.31
CCDC40-201ENST00000269318 DOCK4Q8N1I0 1966 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 DRGXA6NNA5 263 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 MYO1CO00159 1063 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 USP1O94782 785 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 HLA-DQB2P05538 268 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CLTBP09497 229 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 ALADP13716 330 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CNTFP26441 200 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 NPY2RP49146 381 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 MGAT5Q09328 741 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 SF3A3Q12874 501 aaKnown RBP eCLIP16.96■□□□□ 0.314e-9■■■■■ 57
CCDC40-201ENST00000269318 DNAJC3Q13217 504 aa16.96■□□□□ 0.31
CCDC40-201ENST00000269318 CERCAMQ5T4B2 595 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms