RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 MRNIPQ6NTE8 343 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ALKBH5Q6P6C2 394 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 SLC39A5Q6ZMH5 540 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ATCAYQ86WG3 371 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ZDHHC17Q8IUH5 632 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SCAIQ8N9R8 606 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 TNIP2Q8NFZ5 429 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SLC22A17Q8WUG5 538 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 HMGB4Q8WW32 186 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 PIGKQ92643 395 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 REPS1Q96D71 796 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SENP8Q96LD8 212 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SLC38A3Q99624 504 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 C7orf25Q9BPX7 421 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 NIFKQ9BYG3 293 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 EML4Q9HC35 981 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 MRTO4Q9UKD2 239 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 ITGB4P16144 1822 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ARFGEF2Q9Y6D5 1785 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 KLK3P07288 261 aaPredicted RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 ZNF24P17028 368 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 AKAP5P24588 427 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SEC13P55735 322 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 AMHR2Q16671 573 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 CYP2A13Q16696 494 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ARMC12Q5T9G4 340 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 RAET1GQ6H3X3 334 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 IRGCQ6NXR0 463 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 PLEKHM3Q6ZWE6 761 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 NLRP9Q7RTR0 991 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 RHOT1Q8IXI2 618 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 C10orf53Q8N6V4 93 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 MAB21L3Q8N8X9 362 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 OR14C36Q8NHC7 312 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 C18orf25Q96B23 403 aaPredicted RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 LHX5Q9H2C1 402 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SMG5Q9UPR3 1016 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 PRELID1Q9Y255 219 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 AAR2Q9Y312 384 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 PCDHGA4Q9Y5G9 962 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ZFP37Q9Y6Q3 630 aaPredicted RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 KHNYNO15037 678 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 HNRNPA1P09651 372 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP3-201ENST00000268049 ITGA9Q13797 1035 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 WLSQ5T9L3 541 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 FUT10Q6P4F1 479 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 IL27RAQ6UWB1 636 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 FAM9CQ8IZT9 166 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 FMR1NBQ8N0W7 255 aaPredicted RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 MYO1HQ8N1T3 1032 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 TEPSINQ96N21 525 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SLC39A8Q9C0K1 460 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 CFAP97Q9P2B7 532 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 ADAMTS1Q9UHI8 967 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 TRMT6Q9UJA5 497 aaKnown RBP7.97□□□□□ -1.13
USP3-201ENST00000268049 ADAM28Q9UKQ2 775 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 PCDHA11Q9Y5I1 949 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 UBIAD1Q9Y5Z9 338 aa7.97□□□□□ -1.13
USP3-201ENST00000268049 SPATA31C2B4DYI2 1134 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 SNHG28P0DPA3 235 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 GSTT1P30711 240 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 TKTL1P51854 596 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 SF3B4Q15427 424 aaKnown RBP eCLIP7.96□□□□□ -1.132e-6■■■■□ 22.7
USP3-201ENST00000268049 TJAP1Q5JTD0 557 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 LDLRAD1Q5T700 205 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 TTC39BQ5VTQ0 682 aaPredicted RBP7.96□□□□□ -1.13
USP3-201ENST00000268049 DUS1LQ6P1R4 473 aaKnown RBP7.96□□□□□ -1.13
USP3-201ENST00000268049 CMTR2Q8IYT2 770 aaKnown RBP7.96□□□□□ -1.13
USP3-201ENST00000268049 NUP93Q8N1F7 819 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 STX19Q8N4C7 294 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 CMTM5Q96DZ9 223 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 SCLYQ96I15 445 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 NSL1Q96IY1 281 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 NRDE2Q9H7Z3 1164 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 GPRC5CQ9NQ84 441 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 FAM153AQ9UHL3 310 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 LAMB4A4D0S4 1761 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 TIMP1P01033 207 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 AKR1D1P51857 326 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 PDX1P52945 283 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 CAP1Q01518 475 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 ZNF554Q86TJ5 538 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 OXR1Q8N573 874 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 TRAPPC12Q8WVT3 735 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 ITFG2Q969R8 447 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 DEPDC7Q96QD5 511 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 BCAS3Q9H6U6 928 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 UBA2Q9UBT2 640 aaPredicted RBP7.96□□□□□ -1.13
USP3-201ENST00000268049 CDH7Q9ULB5 785 aa7.96□□□□□ -1.13
USP3-201ENST00000268049 KPNA5O15131 536 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 VEGFDO43915 354 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 RECQL4O94761 1208 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 GSNP06396 782 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 CHRM3P20309 590 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 PSMD8P48556 350 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 SMAD3P84022 425 aaKnown RBP7.96□□□□□ -1.14
USP3-201ENST00000268049 RGS1Q08116 209 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 IRF5Q13568 498 aa7.96□□□□□ -1.14
USP3-201ENST00000268049 OASLQ15646 514 aaKnown RBP7.96□□□□□ -1.14
USP3-201ENST00000268049 ARSJQ5FYB0 599 aaPredicted RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms