RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NKAPQ8N5F7 415 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 OXNAD1Q96HP4 312 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 APOL4Q9BPW4 351 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 FAM126AQ9BYI3 521 aaPredicted RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 THAP1Q9NVV9 213 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 MT-CO1P00395 513 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ATP6V1C1P21283 382 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 AMPD1P23109 780 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 FASP25445 335 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 RPL9P32969 192 aaKnown RBP19.46■□□□□ 0.71
UPF1-201ENST00000262803 DLG4P78352 724 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 PPP1R15BQ5SWA1 713 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 ZFPM1Q8IX07 1006 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 DNAJC19Q96DA6 116 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 NSMCE2Q96MF7 247 aa19.46■□□□□ 0.71
UPF1-201ENST00000262803 RCCD1A6NED2 376 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 F8VP50 259 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 SGTAO43765 313 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 CSH1P0DML2 217 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 CSH2P0DML3 217 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 FAAP100Q0VG06 881 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 ZFP1Q6P2D0 407 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 FAM45AQ8TCE6 357 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 HASPINQ8TF76 798 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 ANKRD49Q8WVL7 239 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 UNKQ9C0B0 810 aaKnown RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 PIH1D1Q9NWS0 290 aaKnown RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 SESN1Q9Y6P5 492 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 APOC4-APOC2K7ER74 178 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 APOC2P02655 101 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 TPH1P17752 444 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 MGAT1P26572 445 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 KYAT3Q6YP21 454 aaKnown RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 MILR1Q7Z6M3 343 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 CXorf40AQ8TE69 158 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 EDEM1Q92611 657 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 URADA6NGE7 173 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 ADRA1DP25100 572 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 INTS11Q5TA45 600 aaKnown RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 CDC73Q6P1J9 531 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 SCUBE3Q8IX30 993 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 AADATQ8N5Z0 425 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 ATG16L2Q8NAA4 619 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 DNAJC5Q9H3Z4 198 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 A1CFQ9NQ94 594 aaKnown RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 ADAM28Q9UKQ2 775 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 LACTBL1A8MY62 500 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 ATP9AO75110 1047 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 SLC44A2Q8IWA5 706 aaPredicted RBP19.45■□□□□ 0.7
UPF1-201ENST00000262803 CROTQ9UKG9 612 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 CORO2BQ9UQ03 480 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 TNFSF13BQ9Y275 285 aa19.45■□□□□ 0.7
UPF1-201ENST00000262803 WTIPA6NIX2 430 aaPredicted RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 TRIM24O15164 1050 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ERN1O75460 977 aaKnown RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 LGALS2P05162 132 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 HOXA10P31260 410 aaPredicted RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 THOP1P52888 689 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 LRRC38Q5VT99 294 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 KRT73Q86Y46 540 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 PPP1R14AQ96A00 147 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 GNPTGQ9UJJ9 305 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 NDUFAF1Q9Y375 327 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 HOXB6P17509 224 aaKnown RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 TYMPP19971 482 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 TNFRSF8P28908 595 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 VAC14Q08AM6 782 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 EPS8Q12929 822 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 FBXL19Q6PCT2 694 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CYP20A1Q6UW02 462 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ZBTB49Q6ZSB9 765 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 TRAPPC12Q8WVT3 735 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CDCA5Q96FF9 252 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 P2RX7Q99572 595 aaKnown RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 HTATIP2Q9BUP3 242 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 PORCNQ9H237 461 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CENPXA8MT69 81 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 OASLQ15646 514 aaKnown RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 IL17AQ16552 155 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 DDR2Q16832 855 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 FAIM2Q9BWQ8 316 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 DNMT3LQ9UJW3 386 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CBX6O95503 412 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CLPTM1O96005 669 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ATP6V1B2P21281 511 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ACAT1P24752 427 aaKnown RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 HK2P52789 917 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 FAM46CQ5VWP2 391 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 MIER2Q8N344 545 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 PHC3Q8NDX5 983 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 DDHD1Q8NEL9 900 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 HEXDCQ8WVB3 486 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 BAP1Q92560 729 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 MED8Q96G25 268 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 CATSPER2Q96P56 530 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 MYLK2Q9H1R3 596 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 RRAGCQ9HB90 399 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 ACP6Q9NPH0 428 aa19.44■□□□□ 0.7
UPF1-201ENST00000262803 TIMM13Q9Y5L4 95 aaPredicted RBP19.44■□□□□ 0.7
UPF1-201ENST00000262803 KCNK1O00180 336 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms