RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 DNAAF3Q8N9W5 541 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 NPLOC4Q8TAT6 608 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 AFG1LQ8WV93 481 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 LENG8Q96PV6 779 aaPredicted RBP10.28□□□□□ -0.76
LIG3-201ENST00000262327 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
LIG3-201ENST00000262327 DPYSL4O14531 572 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 ZNF195O14628 629 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 LGALS2P05162 132 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 SPATA31D3P0C874 917 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 TCN1P20061 433 aaPredicted RBP10.27□□□□□ -0.76
LIG3-201ENST00000262327 EPHA3P29320 983 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 PKNOX1P55347 436 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 TNFAIP2Q03169 654 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 SFSWAPQ12872 951 aaKnown RBP10.27□□□□□ -0.76
LIG3-201ENST00000262327 TMCO4Q5TGY1 634 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 TMEM198Q66K66 360 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 IQSEC1Q6DN90 963 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 SPATA31D4Q6ZUB0 917 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 MARK2Q7KZI7 788 aaKnown RBP10.27□□□□□ -0.76
LIG3-201ENST00000262327 PDSS2Q86YH6 399 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 EXOC8Q8IYI6 725 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 MKS1Q9NXB0 559 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 ERAP1Q9NZ08 941 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 ITGA11Q9UKX5 1188 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 SNX10Q9Y5X0 201 aa10.27□□□□□ -0.76
LIG3-201ENST00000262327 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 FAM72CH0Y354 149 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 KLHL2O95198 593 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 GSTA2P09210 222 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 DESP17661 470 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 MPSTP25325 297 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 RGS2P41220 211 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 ADIGQ0VDE8 80 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 MED21Q13503 144 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 DEFB115Q30KQ5 88 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 MMEL1Q495T6 779 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 CERCAMQ5T4B2 595 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FAM72AQ5TYM5 149 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 OLFML2BQ68BL8 750 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FAM72DQ6L9T8 149 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FBXL19Q6PCT2 694 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 SATL1Q86VE3 508 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FAM72BQ86X60 149 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 PPP2R3CQ969Q6 453 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 CDHR5Q9HBB8 845 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 PREBQ9HCU5 417 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 DDX43Q9NXZ2 648 aaKnown RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 KLHL8Q9P2G9 620 aaPredicted RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 PDP2Q9P2J9 529 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 STX16-NPEPL1H3BU86 382 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 COX4I1P13073 169 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 ARSAP15289 507 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 TKTP29401 623 aaKnown RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 NUDT2P50583 147 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 ARHGAP1Q07960 439 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 IFRD2Q12894 506 aaPredicted RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 ITGA7Q13683 1181 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 SYPL2Q5VXT5 272 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 NXNQ6DKJ4 435 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FSTL4Q6MZW2 842 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 TIFABQ6ZNK6 161 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 HFE2Q6ZVN8 426 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 NMD3Q96D46 503 aaKnown RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 DTNBP1Q96EV8 351 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 CERS2Q96G23 380 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 KLHL4Q9C0H6 718 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 NXF3Q9H4D5 531 aaKnown RBP10.27□□□□□ -0.77
LIG3-201ENST00000262327 VRTNQ9H8Y1 702 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 DCDC2Q9UHG0 476 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 INPP5FQ9Y2H2 1132 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 FIS1Q9Y3D6 152 aa10.27□□□□□ -0.77
LIG3-201ENST00000262327 NUP205Q92621 2012 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 A0A096LPK6 155 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 TK2O00142 265 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 SPTLC1O15269 473 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PHGDHO43175 533 aaKnown RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 FKBP6O75344 327 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 ZNF189O75820 626 aaPredicted RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 BEST1O76090 585 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 VCLP18206 1134 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PGAM1P18669 254 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 MRPS22P82650 360 aaKnown RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 GK3PQ14409 553 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 ZNF460Q14592 562 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 LRRC8BQ6P9F7 803 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PAOXQ6QHF9 649 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PNPLA1Q8N8W4 532 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 FAM156AQ8NDB6 213 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 MIPOL1Q8TD10 442 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 NR1H4Q96RI1 486 aaPredicted RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 NUF2Q9BZD4 464 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 C1orf21Q9H246 121 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 GPAMQ9HCL2 828 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 GALNT8Q9NY28 637 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIG3-201ENST00000262327 CLIC5Q9NZA1 410 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PHF24Q9UPV7 400 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 BRCA2P51587 3418 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 M0QYT0 321 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 ALDH1A2O94788 518 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms