RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GALNT18Q6P9A2 607 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF571Q7Z3V5 609 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SMG8Q8ND04 991 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RBM15BQ8NDT2 890 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CRELD1Q96HD1 420 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RNF145Q96MT1 663 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MED28Q9H204 178 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ALG13Q9NP73 1137 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MCUBQ9NWR8 336 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CLN6Q9NWW5 311 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MED11Q9P086 117 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 STUB1Q9UNE7 303 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CD58P19256 250 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ANTXR2P58335 489 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RPL19P84098 196 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TFAMQ00059 246 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 DGKDQ16760 1214 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ANKS1BQ7Z6G8 1248 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GJD3Q8N144 294 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CD93Q9NPY3 652 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ERGIC3Q9Y282 383 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TLL2Q9Y6L7 1015 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 E5RI56 91 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 M0QZ92 97 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 F9P00740 461 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 AKR1B1P15121 316 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 IL6STP40189 918 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RBBP7Q16576 425 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GALNTL6Q49A17 601 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 AGKQ53H12 422 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 FAM102AQ5T9C2 384 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 UBE2J2Q8N2K1 259 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 HDHD2Q9H0R4 259 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZDHHC7Q9NXF8 308 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF224Q9NZL3 707 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ABCG2Q9UNQ0 655 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TNPO3Q9Y5L0 923 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 WWP2O00308 870 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 INPP4BO15327 924 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TLR2O60603 784 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 DGAT1O75907 488 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SNRPB2P08579 225 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TCF3P15923 654 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CD40LGP29965 261 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NPTX2P47972 431 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 GABARAPL2P60520 117 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RHAGQ02094 409 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MAB21L1Q13394 359 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SLC39A6Q13433 755 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 FAM187BQ17R55 369 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 ANKS3Q6ZW76 656 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MMAAQ8IVH4 418 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CENPSQ8N2Z9 138 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 INO80BQ9C086 356 aaPredicted RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 TLE6Q9H808 572 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 SSR3Q9UNL2 185 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 RUVBL2Q9Y230 463 aaKnown RBP4.75□□□□□ -1.65
SCN1A-220ENST00000641603 MYMKA6NI61 221 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP26A1O43174 497 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 KLHL18O94889 574 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 LRIG2O94898 1065 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 VAPBO95292 243 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ETS2P15036 469 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RASA1P20936 1047 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RPL3P39023 403 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CCR3P51677 355 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 OR5T2Q8NGG2 359 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 HEXIM2Q96MH2 286 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 UQCC2Q9BRT2 126 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MRPL4Q9BYD3 311 aaKnown RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 MTMR12Q9C0I1 747 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 IRF2BPLQ9H1B7 796 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SMURF2Q9HAU4 748 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZFYVE28Q9HCC9 887 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 ZNHIT2Q9UHR6 403 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 DUSP12Q9UNI6 340 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 IFT52Q9Y366 437 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 HEY1Q9Y5J3 304 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TNS3Q68CZ2 1445 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP27B1O15528 508 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PHKG2P15735 406 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 PTGER2P43116 358 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 OR2B6P58173 313 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 FSTL1Q12841 308 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 GET4Q7L5D6 327 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TEKT5Q96M29 485 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 THAP2Q9H0W7 228 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 XKR8Q9H6D3 395 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RANBP3Q9H6Z4 567 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 IGSF9BQ9UPX0 1349 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 hCG_1642624A0A1W2PR95 340 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TRIM64A6NGJ6 449 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TRIM64BA6NI03 449 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 SSNA1O43805 119 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CABYRO75952 493 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP19A1P11511 503 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 TFE3P19532 575 aaPredicted RBP4.74□□□□□ -1.65
SCN1A-220ENST00000641603 RAB2AP61019 212 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 CYP4F8P98187 520 aa4.74□□□□□ -1.65
SCN1A-220ENST00000641603 LRRC74AQ0VAA2 488 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms