RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CLGNO14967 610 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 DHHO43323 396 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 FRS3O43559 492 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SNX2O60749 519 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 OFD1O75665 1012 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NEURL1O76050 574 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 UBXN7O94888 489 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CLSTN1O94985 981 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SNUPNO95149 360 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 IL33O95760 270 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 MAP4K4O95819 1239 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 SCGB1D2O95969 90 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SLC3A2P08195 630 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 RFPL3SP0C7P2 107 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NCLP19338 710 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 EN2P19622 333 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 HTR1BP28222 390 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SLC5A2P31639 672 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 HTR7P34969 479 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 STAT6P42226 847 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 EPHB1P54762 984 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 GRIK2Q13002 908 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 GBX1Q14549 363 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ACOX1Q15067 660 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NFE2Q16621 373 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 PGS1Q32NB8 556 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ENTPD8Q5MY95 495 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 IFIT1BQ5T764 474 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 FAM102BQ5T8I3 360 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CACHD1Q5VU97 1274 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ARHGAP17Q68EM7 881 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NXNQ6DKJ4 435 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ABLIM2Q6H8Q1 611 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CXorf57Q6NSI4 855 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 RETSATQ6NUM9 610 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ARHGAP11AQ6P4F7 1023 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 USP17L6PQ6QN14 398 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 C19orf48Q6RUI8 117 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 UNQ6126/PRO20091Q6UXV3 157 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 KYAT3Q6YP21 454 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 ZNF783Q6ZMS7 281 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 RAPH1Q70E73 1250 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CYB5R4Q7L1T6 521 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 KCTD20Q7Z5Y7 419 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 DENND1CQ8IV53 801 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TPH2Q8IWU9 490 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TCEAL8Q8IYN2 117 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 MIER2Q8N344 545 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 MAGEB6Q8N7X4 407 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NEXN-AS1Q8NBZ9 246 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ZBTB34Q8NCN2 500 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ADAD2Q8NCV1 583 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 OR56A3Q8NH54 315 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 IL31RAQ8NI17 732 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SLC35G2Q8TBE7 412 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NEK9Q8TD19 979 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 FAM222BQ8WU58 562 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SPSB4Q96A44 273 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TRIM43Q96BQ3 446 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 MTFMTQ96DP5 389 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 C1GALT1C1Q96EU7 318 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CDK5RAP3Q96JB5 506 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 F2RL3Q96RI0 385 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 PPP1R9BQ96SB3 815 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ZNF347Q96SE7 839 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 MAP3K14Q99558 947 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 GDF15Q99988 308 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SELENOOQ9BVL4 669 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CDK19Q9BWU1 502 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 POLDIP3Q9BY77 421 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 B3GNT5Q9BYG0 378 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 LDHAL6BQ9BYZ2 381 aaPredicted RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 ZCWPW1Q9H0M4 648 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TMEM60Q9H2L4 133 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 FAM83DQ9H4H8 585 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 AS3MTQ9HBK9 375 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 NMRK2Q9NPI5 230 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 PNRC2Q9NPJ4 139 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 A1CFQ9NQ94 594 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 CNNM1Q9NRU3 951 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ZFP57Q9NU63 452 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 COL20A1Q9P218 1284 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 STAP2Q9UGK3 403 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 IP6K2Q9UHH9 426 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 CPA4Q9UI42 421 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 VPS51Q9UID3 782 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 TP53TG3Q9ULZ0 132 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 ANKRD6Q9Y2G4 727 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 LUC7L2Q9Y383 392 aaKnown RBP0.59□□□□□ -2.31
VPS35-212ENST00000640313 PAXBP1Q9Y5B6 917 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 SLC4A4Q9Y6R1 1079 aa0.59□□□□□ -2.31
VPS35-212ENST00000640313 GREB1LQ9C091 1923 aaPredicted RBP0.59□□□□□ -2.32
VPS35-212ENST00000640313 ZNF318Q5VUA4 2279 aa0.59□□□□□ -2.32
VPS35-212ENST00000640313 USP19O94966 1318 aa0.59□□□□□ -2.32
VPS35-212ENST00000640313 hCG_2014768A0A024R1R8 64 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 IGHV4OR15-8A0A075B7B6 117 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 IGHV4-28A0A0C4DH34 117 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 A0A0U1RQJ8 604 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 LINC01553A4QN01 128 aa0.58□□□□□ -2.32
VPS35-212ENST00000640313 AQP7P3A6NL99 342 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms