RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ITIH6Q6UXX5 1313 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 C10orf142B7Z368 130 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 FMO5P49326 533 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 PPP2CBP62714 309 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 PPP2CAP67775 309 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 C19orf57Q0VDD7 668 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 STILQ15468 1287 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 RAP1GAP2Q684P5 730 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 FBXL19Q6PCT2 694 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 PPM1KQ8N3J5 372 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 CCDC34Q96HJ3 373 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 ST7Q9NRC1 585 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 RMND1Q9NWS8 449 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 RAI2Q9Y5P3 530 aa20.05■□□□□ 0.8
CLN3-262ENST00000637699 TRIM49BA6NDI0 452 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 RRP8O43159 456 aaKnown RBP20.04■□□□□ 0.8
CLN3-262ENST00000637699 VAV1P15498 845 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 MZF1P28698 734 aaPredicted RBP20.04■□□□□ 0.8
CLN3-262ENST00000637699 MAT2AP31153 395 aaKnown RBP20.04■□□□□ 0.8
CLN3-262ENST00000637699 RXRGP48443 463 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 NUCB2P80303 420 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 ZNF658Q5TYW1 1059 aaPredicted RBP20.04■□□□□ 0.8
CLN3-262ENST00000637699 SYPL2Q5VXT5 272 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 TAC4Q86UU9 113 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 CHSY1Q86X52 802 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 SPATS2Q86XZ4 545 aaKnown RBP20.04■□□□□ 0.8
CLN3-262ENST00000637699 SLC39A7Q92504 469 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 NRSN2Q9GZP1 204 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 PRORYQ9H606 182 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 ERVMER34-1Q9H9K5 563 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 TJP2Q9UDY2 1190 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 MYLKQ15746 1914 aa20.04■□□□□ 0.8
CLN3-262ENST00000637699 CAPN9O14815 690 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 LATO43561 262 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 APOEP02649 317 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 TACR2P21452 398 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 DRD3P35462 400 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 NNMTP40261 264 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 METAP1P53582 386 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 NNTQ13423 1086 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 ELAVL3Q14576 367 aaKnown RBP20.03■□□□□ 0.8
CLN3-262ENST00000637699 RTP5Q14D33 572 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 ZC3H12AQ5D1E8 599 aaKnown RBP20.03■□□□□ 0.8
CLN3-262ENST00000637699 NAPEPLDQ6IQ20 393 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 PRPF39Q86UA1 669 aaKnown RBP20.03■□□□□ 0.8
CLN3-262ENST00000637699 OXR1Q8N573 874 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 MFSD2AQ8NA29 543 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 SCAND2PQ9GZW5 306 aaPredicted RBP20.03■□□□□ 0.8
CLN3-262ENST00000637699 GDPD2Q9HCC8 539 aa20.03■□□□□ 0.8
CLN3-262ENST00000637699 TPX2Q9ULW0 747 aaKnown RBP20.03■□□□□ 0.8
CLN3-262ENST00000637699 ARID1BQ8NFD5 2236 aaPredicted RBP20.02■□□□□ 0.8
CLN3-262ENST00000637699 FLNBO75369 2602 aaKnown RBP20.02■□□□□ 0.8
CLN3-262ENST00000637699 RTN2O75298 545 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 PDGFRAP16234 1089 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 CKMT2P17540 419 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 SFMBT2Q5VUG0 894 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 RRAGAQ7L523 313 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 CIR1Q86X95 450 aaPredicted RBP20.02■□□□□ 0.8
CLN3-262ENST00000637699 BAP1Q92560 729 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 FCRL3Q96P31 734 aaPredicted RBP20.02■□□□□ 0.8
CLN3-262ENST00000637699 ARHGAP20Q9P2F6 1191 aa20.02■□□□□ 0.8
CLN3-262ENST00000637699 PTPRQQ9UMZ3 2332 aa20.02■□□□□ 0.79
CLN3-262ENST00000637699 SART1O43290 800 aaKnown RBP20.01■□□□□ 0.79
CLN3-262ENST00000637699 SDC3O75056 442 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 GLDCP23378 1020 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 LRRC63Q05C16 580 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 ILKQ13418 452 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 COBLL1Q53SF7 1204 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 KANSL1Q7Z3B3 1105 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 ERCC4Q92889 916 aaPredicted RBP20.01■□□□□ 0.79
CLN3-262ENST00000637699 BTN2A3PQ96KV6 586 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 SPAG5Q96R06 1193 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 METTL14Q9HCE5 456 aaKnown RBP20.01■□□□□ 0.79
CLN3-262ENST00000637699 CYTH4Q9UIA0 394 aa20.01■□□□□ 0.79
CLN3-262ENST00000637699 F5H5T6 163 aa20■□□□□ 0.79
CLN3-262ENST00000637699 TK2O00142 265 aa20■□□□□ 0.79
CLN3-262ENST00000637699 ATXN7O15265 892 aaPredicted RBP20■□□□□ 0.79
CLN3-262ENST00000637699 BRINP1O60477 761 aa20■□□□□ 0.79
CLN3-262ENST00000637699 C1QL1O75973 258 aa20■□□□□ 0.79
CLN3-262ENST00000637699 GPD2P43304 727 aa20■□□□□ 0.79
CLN3-262ENST00000637699 STAT4Q14765 748 aa20■□□□□ 0.79
CLN3-262ENST00000637699 POM121L1PQ3SYA9 428 aa20■□□□□ 0.79
CLN3-262ENST00000637699 ACCSLQ4AC99 568 aa20■□□□□ 0.79
CLN3-262ENST00000637699 DENND1BQ6P3S1 775 aa20■□□□□ 0.79
CLN3-262ENST00000637699 ARHGEF19Q8IW93 802 aa20■□□□□ 0.79
CLN3-262ENST00000637699 CCAR2Q8N163 923 aaKnown RBP20■□□□□ 0.79
CLN3-262ENST00000637699 FRS2Q8WU20 508 aa20■□□□□ 0.79
CLN3-262ENST00000637699 GSDMAQ96QA5 445 aa20■□□□□ 0.79
CLN3-262ENST00000637699 SARDHQ9UL12 918 aa20■□□□□ 0.79
CLN3-262ENST00000637699 CLCA2Q9UQC9 943 aa20■□□□□ 0.79
CLN3-262ENST00000637699 NYNRINQ9P2P1 1898 aaKnown RBP20■□□□□ 0.79
CLN3-262ENST00000637699 MAGEC1O60732 1142 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 TRUB2O95900 331 aaKnown RBP19.99■□□□□ 0.79
CLN3-262ENST00000637699 ACADSBP45954 432 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 RPL34P49207 117 aaKnown RBP19.99■□□□□ 0.79
CLN3-262ENST00000637699 PITX1P78337 314 aaPredicted RBP19.99■□□□□ 0.79
CLN3-262ENST00000637699 INSM1Q01101 510 aaPredicted RBP19.99■□□□□ 0.79
CLN3-262ENST00000637699 SULT2A1Q06520 285 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 SLC12A1Q13621 1099 aa19.99■□□□□ 0.79
CLN3-262ENST00000637699 CCDC40Q4G0X9 1142 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms