RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SNRNP25Q9BV90 132 aaKnown RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 DHX35Q9H5Z1 703 aaKnown RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 ZWILCHQ9H900 591 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 ZDHHC4Q9NPG8 344 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 SEMA4GQ9NTN9 838 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 GPATCH2LQ9NWQ4 482 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 MPP6Q9NZW5 540 aa18.61■□□□□ 0.57
CLN3-239ENST00000628023 KIAA1522Q9P206 1035 aaPredicted RBP18.61■□□□□ 0.57
CLN3-239ENST00000628023 IGLV3-10A0A075B6K4 115 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 DRGXA6NNA5 263 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 NRDCO43847 1150 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 CNTN5O94779 1100 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 LRIG2O94898 1065 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 KLF8O95600 359 aaPredicted RBP18.6■□□□□ 0.57
CLN3-239ENST00000628023 POLR2EP19388 210 aaKnown RBP18.6■□□□□ 0.57
CLN3-239ENST00000628023 GJC1P36383 396 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 NRG1Q02297 640 aaPredicted RBP18.6■□□□□ 0.57
CLN3-239ENST00000628023 MESDQ14696 234 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 E2F5Q15329 346 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 C5orf22Q49AR2 442 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 ALFQ53S48 1182 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 FSCBQ5H9T9 825 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 ERMARDQ5T6L9 678 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 EMC10Q5UCC4 262 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 EGFLAMQ63HQ2 1017 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 PKN3Q6P5Z2 889 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 CHPFQ8IZ52 775 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 PYROXD2Q8N2H3 581 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 CCDC33Q8N5R6 958 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 CAMKK1Q8N5S9 505 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 ALLCQ8N6M5 410 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLN3-239ENST00000628023 TXNDC5Q8NBS9 432 aaKnown RBP18.6■□□□□ 0.57
CLN3-239ENST00000628023 ACRBPQ8NEB7 543 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 CCDC112Q8NEF3 446 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 NETO1Q8TDF5 533 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 KCNV2Q8TDN2 545 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 C2orf42Q9NWW7 574 aa18.6■□□□□ 0.57
CLN3-239ENST00000628023 PPARGC1AQ9UBK2 798 aaKnown RBP18.6■□□□□ 0.57
CLN3-239ENST00000628023 RALGAPA1Q6GYQ0 2036 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 ANTXRLA6NF34 631 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FAM72CH0Y354 149 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 TIMM44O43615 452 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 RPP40O75818 363 aaKnown RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 PROSCO94903 275 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 ATP5BP06576 529 aaKnown RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 RHOCP08134 193 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 OR1E1P30953 314 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 L1CAMP32004 1257 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 CSKP41240 450 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 KIR2DL1P43626 348 aaPredicted RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 TPI1P60174 286 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 KRT83P78385 493 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 HADHQ16836 314 aaKnown RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 SMTNL2Q2TAL5 461 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FUT11Q495W5 492 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 HSF5Q4G112 596 aaPredicted RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 EOGTQ5NDL2 527 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 C6orf118Q5T5N4 469 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FAM72AQ5TYM5 149 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 MANEALQ5VSG8 457 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 MBLAC2Q68D91 279 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 SDE2Q6IQ49 451 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FAM72DQ6L9T8 149 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FAM72BQ86X60 149 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 TXLNBQ8N3L3 684 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 FAM160A2Q8N612 972 aaPredicted RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 GAB3Q8WWW8 586 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 HSPH1Q92598 858 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 LOXL4Q96JB6 756 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 MAGEB5Q9BZ81 275 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 MUC3BQ9H195 1237 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 ELOVL2Q9NXB9 296 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 STARD13Q9Y3M8 1113 aa18.59■□□□□ 0.57
CLN3-239ENST00000628023 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.59■□□□□ 0.57
CLN3-239ENST00000628023 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.58■□□□□ 0.56
CLN3-239ENST00000628023 MTA2O94776 668 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 TCF4P15884 667 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 EPHB2P29323 1055 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 MAN1A1P33908 653 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 ARHGAP25P42331 645 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 NUMBP49757 651 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 NAP1L1P55209 391 aaKnown RBP18.58■□□□□ 0.56
CLN3-239ENST00000628023 SLC12A1Q13621 1099 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 DMC1Q14565 340 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 BOLA3Q53S33 107 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 PPP6R3Q5H9R7 873 aaPredicted RBP18.58■□□□□ 0.56
CLN3-239ENST00000628023 PITRM1Q5JRX3 1037 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 CXorf57Q6NSI4 855 aaKnown RBP18.58■□□□□ 0.56
CLN3-239ENST00000628023 PRR23CQ6ZRP0 262 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 PSTKQ8IV42 348 aaKnown RBP18.58■□□□□ 0.56
CLN3-239ENST00000628023 IL17RCQ8NAC3 791 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 CYB5D2Q8WUJ1 264 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 SORCS1Q8WY21 1168 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 PPP1R9BQ96SB3 815 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 DESI2Q9BSY9 194 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 MMP17Q9ULZ9 603 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 TFR2Q9UP52 801 aa18.58■□□□□ 0.56
CLN3-239ENST00000628023 DCDC2BA2VCK2 349 aa18.57■□□□□ 0.56
CLN3-239ENST00000628023 EEF2KO00418 725 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms