RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CRACR2AQ9BSW2 395 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 SYNCQ9H7C4 482 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 DACH1Q9UI36 760 aa12.3□□□□□ -0.44
UPF3B-204ENST00000619445 ATRXP46100 2492 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 APC2O95996 2303 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 NYNRINQ9P2P1 1898 aaKnown RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 SRRM3A6NNA2 597 aaPredicted RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 ALOX15BO15296 676 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 MID1O15344 667 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 MAGEC1O60732 1142 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 GADD45BO75293 160 aaPredicted RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CLDN11O75508 207 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 F9P00740 461 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CALCAP01258 141 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 IGHV4-34P06331 123 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 NOS2P35228 1153 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CTSKP43235 329 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 FSCBQ5H9T9 825 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CCNI2Q6ZMN8 369 aaPredicted RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 SLC26A9Q7LBE3 791 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 MMAAQ8IVH4 418 aaKnown RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CCAR2Q8N163 923 aaKnown RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 MSANTD4Q8NCY6 345 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 ZNF397Q8NF99 534 aaPredicted RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 OR8D1Q8WZ84 308 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CCDC114Q96M63 670 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 IL21RQ9HBE5 538 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 CYTH4Q9UIA0 394 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 SLC25A13Q9UJS0 675 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 STAP1Q9ULZ2 295 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 FARP1Q9Y4F1 1045 aaPredicted RBP12.29□□□□□ -0.44
UPF3B-204ENST00000619445 SNX11Q9Y5W9 270 aa12.29□□□□□ -0.44
UPF3B-204ENST00000619445 TMEM131Q92545 1883 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 DMXL2Q8TDJ6 3036 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 PTPRBP23467 1997 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 A0A1W2PP55 124 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 FAM47DPA6NHR8 397 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 BECN2A8MW95 431 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 TTC34A8MYJ7 566 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 E9PAM4 449 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 C1QTNF3-AMACRE9PGA6 284 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 DKK1O94907 266 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 IL1BP01584 269 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 SLC9A1P19634 815 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 PON1P27169 355 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 CD38P28907 300 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 SCNN1AP37088 669 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 ARRB1P49407 418 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 OVGP1Q12889 678 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 ZNF177Q13360 481 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 MAN2A1Q16706 1144 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 CT47A1Q5JQC4 288 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 BRMS1LQ5PSV4 323 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 NCEH1Q6PIU2 408 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 PROSER1Q86XN7 944 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 DEFB106AQ8N104 65 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 PTPRN2Q92932 1015 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 RPRD1AQ96P16 312 aaPredicted RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 CPXM1Q96SM3 734 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 FAM129BQ96TA1 746 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 PRMT1Q99873 361 aaKnown RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 NEUROG2Q9H2A3 272 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 CCDC86Q9H6F5 360 aaKnown RBP12.28□□□□□ -0.44
UPF3B-204ENST00000619445 GDF3Q9NR23 364 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 SLCO3A1Q9UIG8 710 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 DMTF1Q9Y222 760 aa12.28□□□□□ -0.44
UPF3B-204ENST00000619445 ASPMQ8IZT6 3477 aa12.27□□□□□ -0.44
UPF3B-204ENST00000619445 TP53BP1Q12888 1972 aaPredicted RBP12.27□□□□□ -0.44
UPF3B-204ENST00000619445 COL5A1P20908 1838 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 A0A1B0GTQ1 180 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 DAB1O75553 588 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 C1SP09871 688 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 PDGFRAP16234 1089 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 MZF1P28698 734 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 ERCC5P28715 1186 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 PSMD8P48556 350 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 ADPRHP54922 357 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 CDH4P55283 916 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 KRT83P78385 493 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 SLC6A3Q01959 620 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 OR6B2Q6IFH4 312 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 FBXL22Q6P050 247 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 OLFML1Q6UWY5 402 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 MMS22LQ6ZRQ5 1243 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 TMPRSS7Q7RTY8 843 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 PRPF39Q86UA1 669 aaKnown RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 IQCHQ86VS3 1027 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 APCDD1Q8J025 514 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 TMEM35BQ8NCS4 154 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 OR14C36Q8NHC7 312 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 MYEOVQ96EZ4 313 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 RPL10LQ96L21 214 aaKnown RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 ELF4Q99607 663 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 ORAI3Q9BRQ5 295 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 C2orf49Q9BVC5 232 aaPredicted RBP12.27□□□□□ -0.45
UPF3B-204ENST00000619445 PDCL3Q9H2J4 239 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 ERVMER34-1Q9H9K5 563 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 AASDHPPTQ9NRN7 309 aa12.27□□□□□ -0.45
UPF3B-204ENST00000619445 DKK4Q9UBT3 224 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms