RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 EBNA1BP2Q99848 306 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 MXRA8Q9BRK3 442 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A7Q9HAW7 530 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A10Q9HAW8 530 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A8Q9HAW9 530 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 GPRC5CQ9NQ84 441 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TRNAU1APQ9NX07 287 aaKnown RBP11.06□□□□□ -0.64
UPF3A-212ENST00000619079 HOXC10Q9NYD6 342 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 HACD3Q9P035 362 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 TMEM9Q9P0T7 183 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 COPG2Q9UBF2 871 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 PRR12Q9ULL5 1215 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 SLC45A1Q9Y2W3 748 aa11.06□□□□□ -0.64
UPF3A-212ENST00000619079 A0A1B0GTW7 788 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 C7orf72A4D263 438 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 TMEM114B3SHH9 223 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 DDX39AO00148 427 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 XPOTO43592 962 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 TADA2AO75478 443 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 RNASEH2AO75792 299 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SULT1C4O75897 302 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 HSPA4LO95757 839 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 INHBBP09529 407 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 EPHA3P29320 983 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SSTR3P32745 418 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ZNF132P52740 706 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CRHR2Q13324 411 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 NAB1Q13506 487 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ITGA7Q13683 1181 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CEACAM7Q14002 265 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CLPPQ16740 277 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SMYD5Q6GMV2 418 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SLC39A4Q6P5W5 647 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 FRA10AC1Q70Z53 315 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 FAM160B2Q86V87 743 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CAND1Q86VP6 1230 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 C10orf107Q8IVU9 208 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 C4orf19Q8IY42 314 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CMASQ8NFW8 434 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 TRUB1Q8WWH5 349 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SLC7A3Q8WY07 619 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CDKL2Q92772 493 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 EFHD2Q96C19 240 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 NTPCRQ9BSD7 190 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 EFHD1Q9BUP0 239 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 TDRD1Q9BXT4 1180 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SLC4A5Q9BY07 1137 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 TSPYL2Q9H2G4 693 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 PDZD7Q9H5P4 517 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 WDR41Q9HAD4 459 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 PLAC1Q9HBJ0 212 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 RNF186Q9NXI6 227 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CROTQ9UKG9 612 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SLC30A1Q9Y6M5 507 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 WDR64B1ANS9 1081 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 H0YCG3 227 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 H7C0C1 242 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ACOT8O14734 319 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CA12O43570 354 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A6P19224 532 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A1P22309 533 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A4P22310 534 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 DCKP27707 260 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CDH5P33151 784 aaPredicted RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A3P35503 534 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UGT1A5P35504 534 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SERPINB5P36952 375 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ATP5OP48047 213 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 RXRGP48443 463 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 RPS3AP61247 264 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 UBXN2AP68543 259 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ART3Q13508 389 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 KCNT1Q5JUK3 1230 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 DEPDC1Q5TB30 811 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SPOPLQ6IQ16 392 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 NIPA1Q7RTP0 329 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ATG4CQ96DT6 458 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ASB9Q96DX5 294 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 CCDC138Q96M89 665 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 HEPHQ9BQS7 1158 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 IMPG2Q9BZV3 1241 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 COQ10BQ9H8M1 238 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 EFCAB1Q9HAE3 211 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ANLNQ9NQW6 1124 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 ANKEF1Q9NU02 776 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 SEPT3Q9UH03 358 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 MRPL11Q9Y3B7 192 aaKnown RBP11.05□□□□□ -0.64
UPF3A-212ENST00000619079 PCDHA11Q9Y5I1 949 aa11.05□□□□□ -0.64
UPF3A-212ENST00000619079 GOLGA8QA0A0J9YX86 632 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 GOLGA8OA6NCC3 632 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 GOLGA8NF8WBI6 632 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 TRIM38O00635 465 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 KRT3P12035 628 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 PTPN1P18031 435 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 IL1R2P27930 398 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 MS4A2Q01362 244 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 PDE1CQ14123 709 aaPredicted RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 DCAF6Q58WW2 860 aa11.04□□□□□ -0.64
UPF3A-212ENST00000619079 CPSF7Q8N684 471 aaKnown RBP11.04□□□□□ -0.64
UPF3A-212ENST00000619079 SAMD3Q8N6K7 520 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms