RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IL1RL1Q01638 556 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 CERCAMQ5T4B2 595 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 APPL2Q8NEU8 664 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 SHKBP1Q8TBC3 707 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 ACMSDQ8TDX5 336 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 DDI1Q8WTU0 396 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 RNF139Q8WU17 664 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 MFSD3Q96ES6 412 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 AGAP2Q99490 1192 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 CCDC106Q9BWC9 280 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 UBE2OQ9C0C9 1292 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 DNAJC5Q9H3Z4 198 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 USP29Q9HBJ7 922 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 PHLPP1O60346 1717 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 TK2O00142 265 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 HDAC3O15379 428 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 B4GALT4O60513 344 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 FARP2O94887 1054 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 ATP5BP06576 529 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 DHRS4L1P0CG22 281 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 TSPAN8P19075 237 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 ATICP31939 592 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 NR2C2P49116 596 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 PDSS2Q86YH6 399 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 LENG1Q96BZ8 264 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 MCRS1Q96EZ8 462 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 SIGLEC10Q96LC7 697 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 MRPL45Q9BRJ2 306 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 MRPL46Q9H2W6 279 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 SHANK3Q9BYB0 1731 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 ATP6AP2A0A1C7CYW4 349 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 XPOTO43592 962 aaKnown RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 ATP6AP2O75787 350 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 SUPT7LO94864 414 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 HNRNPLP14866 589 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIG1-221ENST00000613670 AKAP5P24588 427 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 EN1Q05925 392 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 PRKAA1Q13131 559 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 KCTD21Q4G0X4 260 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 MAP1SQ66K74 1059 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 CLVS1Q8IUQ0 354 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 CCDC185Q8N715 623 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIG1-221ENST00000613670 GATA5Q9BWX5 397 aaPredicted RBP12.86□□□□□ -0.35
LIG1-221ENST00000613670 PIM2Q9P1W9 311 aa12.86□□□□□ -0.35
LIG1-221ENST00000613670 MFSD11O43934 449 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 DDHD2O94830 711 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 AOC1P19801 751 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 CRABP2P29373 138 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 DALRD3Q5D0E6 543 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 GRAMD4Q6IC98 578 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ZFAND2BQ8WV99 257 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 CCDC138Q96M89 665 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ING2Q9H160 280 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 PREBQ9HCU5 417 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ZNF214Q9UL59 606 aaPredicted RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 PIN4Q9Y237 131 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 XRCC1P18887 633 aaPredicted RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 SCNN1BP51168 640 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 STX5Q13190 355 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ARL13AQ5H913 290 aaPredicted RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 MYO1HQ8N1T3 1032 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 PQLC3Q8N755 202 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 TNIP3Q96KP6 325 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 OXCT2Q9BYC2 517 aaPredicted RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 PFDN4Q9NQP4 134 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 CHCHD3Q9NX63 227 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 TSR3Q9UJK0 312 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 ZBBXA8MT70 800 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 GAS2O43903 313 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 SRP72O76094 671 aaKnown RBP12.85□□□□□ -0.35
LIG1-221ENST00000613670 ZNF286BP0CG31 522 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 STMN1P16949 149 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 PRKCHP24723 683 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 THOP1P52888 689 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 BCAT1P54687 386 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 IRF9Q00978 393 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 RALGDSQ12967 914 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 FAM83EQ2M2I3 478 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 DNERQ8NFT8 737 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 TSPAN14Q8NG11 270 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 EDEM1Q92611 657 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 XYLT2Q9H1B5 865 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 PIF1Q9H611 641 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ASB7Q9H672 318 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 PTPRHQ9HD43 1115 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 ARHGEF38Q9NXL2 777 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 DTLQ9NZJ0 730 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 STYXL1Q9Y6J8 313 aa12.85□□□□□ -0.35
LIG1-221ENST00000613670 FAM159BA6NKW6 160 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 IL10P22301 178 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 ETFBP38117 255 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CCR10P46092 362 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 CTBP1Q13363 440 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 MAPRE2Q15555 327 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 NADK2Q4G0N4 442 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 MBLAC2Q68D91 279 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 DPP9Q86TI2 863 aa12.84□□□□□ -0.35
LIG1-221ENST00000613670 SLC41A1Q8IVJ1 513 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms