RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 TRIM69Q86WT6 500 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 PTRH1Q86Y79 214 aaKnown RBP18.27■□□□□ 0.52
SSBP4-207ENST00000600244 TMEM145Q8NBT3 493 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 TPCN2Q8NHX9 752 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 ZNF564Q8TBZ8 553 aaPredicted RBP18.27■□□□□ 0.52
SSBP4-207ENST00000600244 CYFIP2Q96F07 1278 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 EPSTI1Q96J88 318 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 CLIC6Q96NY7 704 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 DUSP23Q9BVJ7 150 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 PANK4Q9NVE7 773 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 PCDHA7Q9UN72 937 aa18.27■□□□□ 0.52
SSBP4-207ENST00000600244 CCDC187A0A096LP49 1063 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 NEMP2A6NFY4 417 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 TTC34A8MYJ7 566 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 CUTAO60888 179 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 PHACTR2O75167 634 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 TCEA3O75764 348 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 SLFN14P0C7P3 912 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 SLC5A2P31639 672 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 CSKP41240 450 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 C14orf80Q86SX3 495 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 STK40Q8N2I9 435 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 SPATA32Q96LK8 384 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 TWNKQ96RR1 684 aa18.26■□□□□ 0.51
SSBP4-207ENST00000600244 RP1P56715 2156 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 CACNA1DQ01668 2161 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 ITIH6Q6UXX5 1313 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 EDDM13A0A1B0GTR0 161 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 TGFB1I1O43294 461 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 RNGTTO60942 597 aaKnown RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 VNN1O95497 513 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 LATS1O95835 1130 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 PDX1P52945 283 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 ZNF177Q13360 481 aaPredicted RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 NCOA4Q13772 614 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 MORC3Q14149 939 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 POM121L1PQ3SYA9 428 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 GUSBP11Q6P575 273 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 RSRC2Q7L4I2 434 aaKnown RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 EFL1Q7Z2Z2 1120 aaKnown RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 ARHGAP18Q8N392 663 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 PTPRN2Q92932 1015 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 IFT43Q96FT9 208 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 LIN37Q96GY3 246 aaPredicted RBP18.25■□□□□ 0.51
SSBP4-207ENST00000600244 FUCA2Q9BTY2 467 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 WDR70Q9NW82 654 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 SRPK3Q9UPE1 567 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 PCDHGA4Q9Y5G9 962 aa18.25■□□□□ 0.51
SSBP4-207ENST00000600244 CPED1A4D0V7 1026 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 EME2A4GXA9 379 aaPredicted RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 SLC7A4O43246 635 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 PLRG1O43660 514 aaKnown RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 RTN2O75298 545 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 NEBLO76041 1014 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 C4BPAP04003 597 aaKnown RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 MZF1P28698 734 aaPredicted RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 CASRP41180 1078 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 METAP1P53582 386 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 CDKN3Q16667 212 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 SETMARQ53H47 684 aaPredicted RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 PIK3R6Q5UE93 754 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 SHC4Q6S5L8 630 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 FIBINQ8TAL6 211 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 PLEKHO2Q8TD55 490 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 HTR3CQ8WXA8 447 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 DUSP16Q9BY84 665 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 IRX2Q9BZI1 471 aaPredicted RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 ADNPQ9H2P0 1102 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 GDPD2Q9HCC8 539 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 AGPAT3Q9NRZ7 376 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 PLEKHB1Q9UF11 243 aaPredicted RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 SLCO3A1Q9UIG8 710 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 ERVW-1Q9UQF0 538 aa18.24■□□□□ 0.51
SSBP4-207ENST00000600244 HBS1LQ9Y450 684 aaKnown RBP18.24■□□□□ 0.51
SSBP4-207ENST00000600244 UBE4BO95155 1302 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 IL1BP01584 269 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 SRPRAP08240 638 aaKnown RBP18.23■□□□□ 0.51
SSBP4-207ENST00000600244 WT1P19544 449 aaPredicted RBP18.23■□□□□ 0.51
SSBP4-207ENST00000600244 ME1P48163 572 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 CASP4P49662 377 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 YWHAGP61981 247 aaKnown RBP eCLIP18.23■□□□□ 0.51
SSBP4-207ENST00000600244 BIRC3Q13489 604 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 ZCCHC8Q6NZY4 707 aaKnown RBP18.23■□□□□ 0.51
SSBP4-207ENST00000600244 ZNF557Q8N988 423 aaPredicted RBP18.23■□□□□ 0.51
SSBP4-207ENST00000600244 XXYLT1Q8NBI6 393 aa18.23■□□□□ 0.51
SSBP4-207ENST00000600244 RIOK3O14730 519 aaKnown RBP18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CASC3O15234 703 aaKnown RBP18.22■□□□□ 0.51
SSBP4-207ENST00000600244 TBL1XO60907 577 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 P4HA1P13674 534 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CTSOP43234 321 aaPredicted RBP18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CYP4F2P78329 520 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CLDN10P78369 228 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 RRAGBQ5VZM2 374 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CRTC1Q6UUV9 634 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 STXBP4Q6ZWJ1 553 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 OR13H1Q8NG92 308 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 NCKIPSDQ9NZQ3 722 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 CCDC39Q9UFE4 941 aa18.22■□□□□ 0.51
SSBP4-207ENST00000600244 FAM237AA0A1B0GTK4 181 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms