RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TAC4Q86UU9 113 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 MMAAQ8IVH4 418 aaKnown RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 LGI2Q8N0V4 545 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 HJURPQ8NCD3 748 aaPredicted RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 BAHD1Q8TBE0 780 aaPredicted RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 EPS8L1Q8TE68 723 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 RPL10LQ96L21 214 aaKnown RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 NOX5Q96PH1 765 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 SLC4A5Q9BY07 1137 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 PCED1AQ9H1Q7 454 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 RSPH9Q9H1X1 276 aaPredicted RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 NEUROG2Q9H2A3 272 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 PABPC3Q9H361 631 aaKnown RBP12.91□□□□□ -0.34
UPF1-203ENST00000594504 SGK2Q9HBY8 427 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 FBXL12Q9NXK8 326 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 TJP2Q9UDY2 1190 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 SLCO3A1Q9UIG8 710 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 ERVW-1Q9UQF0 538 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 TLR6Q9Y2C9 796 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 CEP83Q9Y592 693 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 CACNA1EQ15878 2313 aa12.91□□□□□ -0.34
UPF1-203ENST00000594504 PAPSS1O43252 624 aaPredicted RBP12.9□□□□□ -0.34
UPF1-203ENST00000594504 SART1O43290 800 aaKnown RBP12.9□□□□□ -0.34
UPF1-203ENST00000594504 IGHV4-34P06331 123 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 CD27P26842 260 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 GALCP54803 685 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 ST8SIA6P61647 398 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 ZBTB16Q05516 673 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 PDCLQ13371 301 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 TAF5Q15542 800 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 CCDC157Q569K6 752 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 PITRM1Q5JRX3 1037 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 KIAA0895LQ68EN5 471 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 TMEM110Q86TL2 294 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 NOP9Q86U38 636 aaKnown RBP12.9□□□□□ -0.34
UPF1-203ENST00000594504 PROSER1Q86XN7 944 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 ZNF677Q86XU0 584 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 PASD1Q8IV76 773 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 MDM1Q8TC05 714 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 SERPINB11Q96P15 392 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 FAM129BQ96TA1 746 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 DDX50Q9BQ39 737 aaKnown RBP12.9□□□□□ -0.34
UPF1-203ENST00000594504 PDCL3Q9H2J4 239 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 NOCTQ9UK39 431 aaKnown RBP12.9□□□□□ -0.34
UPF1-203ENST00000594504 MYO6Q9UM54 1294 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 LHX6Q9UPM6 363 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 NCKAP1Q9Y2A7 1128 aa12.9□□□□□ -0.34
UPF1-203ENST00000594504 SYNJ2BP-COX16A0A087WUM0 186 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 E5RJQ4 531 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 PLK4O00444 970 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CAPN9O14815 690 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 WNT9AO14904 365 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 FLRT2O43155 660 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 LUC7L3O95232 432 aaKnown RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 LSM8O95777 96 aaKnown RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 WNT1P04628 370 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 TPM3P06753 285 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CCDC172P0C7W6 258 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 TACR2P21452 398 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 SLC8A1P32418 973 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CDH5P33151 784 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 GRIA4P48058 902 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 STK19P49842 368 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 SNX16P57768 344 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CDH18Q13634 790 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 SUZ12Q15022 739 aaKnown RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 TEAD4Q15561 434 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CST6Q15828 149 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 HNRNPA1L2Q32P51 320 aaKnown RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 TTC31Q49AM3 519 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 TAF3Q5VWG9 929 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 NCEH1Q6PIU2 408 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 CIR1Q86X95 450 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 STK40Q8N2I9 435 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 WDTC1Q8N5D0 677 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 TMEM35BQ8NCS4 154 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 RNF214Q8ND24 703 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 C1orf131Q8NDD1 294 aaKnown RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 PTPRN2Q92932 1015 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 PPP1R13BQ96KQ4 1090 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 SLC6A18Q96N87 628 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 IRX2Q9BZI1 471 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 FBRSQ9HAH7 460 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 OSGEPQ9NPF4 335 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 COX16Q9P0S2 106 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 IFNKQ9P0W0 207 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 KIAA1522Q9P206 1035 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 PCDHGB2Q9Y5G2 931 aa12.89□□□□□ -0.35
UPF1-203ENST00000594504 TP53BP1Q12888 1972 aaPredicted RBP12.89□□□□□ -0.35
UPF1-203ENST00000594504 EPG5Q9HCE0 2579 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 ADAMTS20P59510 1910 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 USP24Q9UPU5 2620 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 A0A1W2PPC4 97 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 TYW5A2RUC4 315 aaKnown RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 FAM149AA5PLN7 773 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 RNASEH2AO75792 299 aaKnown RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 TRUB2O95900 331 aaKnown RBP12.88□□□□□ -0.35
UPF1-203ENST00000594504 ASLP04424 464 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 VAV1P15498 845 aa12.88□□□□□ -0.35
UPF1-203ENST00000594504 MZF1P28698 734 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms